/// <summary>
/// Constructor to create the chromophore spectrum
/// </summary>
/// <param name="wavelengths">A list of wavelengths</param>
/// <param name="spectrum">A list of spectral values</param>
/// <param name="name">The name of the chromophore absorber</param>
/// <param name="coeffType">The chromophore coefficient type</param>
/// <param name="absUnits">The absorption coefficient units</param>
/// <param name="molarUnit">The molar units</param>
/// <param name="wavelengthUnit">The wavelength units</param>
public ChromophoreSpectrum(List <double> wavelengths, List <double> spectrum, string name, ChromophoreCoefficientType coeffType, AbsorptionCoefficientUnit absUnits, MolarUnit molarUnit, WavelengthUnit wavelengthUnit)
{
ChromophoreCoefficientType = coeffType;
AbsorptionCoefficientUnit = absUnits;
WavelengthUnit = wavelengthUnit;
MolarUnit = molarUnit;
Name = name;
Spectrum = spectrum;
Wavelengths = wavelengths;
}
private ChromophoreSpectrum CreateChromophoreSpectrum()
{
string name = "Melanin";
AbsorptionCoefficientUnit muaUnit = AbsorptionCoefficientUnit.InverseMillimeters;
MolarUnit molarUnit = MolarUnit.None;
ChromophoreCoefficientType coeffType = ChromophoreCoefficientType.FractionalAbsorptionCoefficient;
// populate list of wavelengths
List <double> wavelengths = new List <double>();
wavelengths.Add(0.0);
wavelengths.Add(1.0);
wavelengths.Add(2.0);
// populate list of values
List <double> values = new List <double>();
values.Add(0.1);
values.Add(1.1);
values.Add(2.1);
return(new ChromophoreSpectrum(wavelengths, values, name, coeffType, muaUnit, molarUnit, WavelengthUnit.Nanometers));
}
private ChromophoreSpectrumDictionary CreateDictionary()
{
string name = "Melanin";
AbsorptionCoefficientUnit muaUnit = AbsorptionCoefficientUnit.InverseMillimeters;
MolarUnit molarUnit = MolarUnit.MicroMolar;
ChromophoreCoefficientType coeffType = ChromophoreCoefficientType.FractionalAbsorptionCoefficient;
// populate list of wavelengths
List <double> wavelengths = new List <double>();
wavelengths.Add(0.0);
wavelengths.Add(1.0);
wavelengths.Add(2.0);
// populate list of values
List <double> values = new List <double>();
values.Add(0.1);
values.Add(1.1);
values.Add(2.1);
ChromophoreSpectrum chromophoreSpectrum = new ChromophoreSpectrum(wavelengths, values, name, coeffType, muaUnit, molarUnit, WavelengthUnit.Nanometers);
var testDictionary = new ChromophoreSpectrumDictionary();
testDictionary.Add(chromophoreSpectrum.Name, chromophoreSpectrum);
name = "HbO2";
muaUnit = AbsorptionCoefficientUnit.InverseMillimeters;
molarUnit = MolarUnit.MicroMolar;
coeffType = ChromophoreCoefficientType.MolarAbsorptionCoefficient;
chromophoreSpectrum = new ChromophoreSpectrum(wavelengths, values, name, coeffType, muaUnit, molarUnit, WavelengthUnit.Nanometers);
testDictionary.Add(chromophoreSpectrum.Name, chromophoreSpectrum);
return(testDictionary);
}
/// <summary>
/// Creates a chromophore with a particular value. Name is used to reference the spectral database.
/// </summary>
/// <param name="name">Name of the chromophore</param>
/// <param name="concentration">Concentration</param>
/// <param name="chromophoreCoefficientType">Chromophore coefficient type defined by the Enum <see cref="Vts.ChromophoreCoefficientType">ChromophoreCoefficientType</see></param>
public ChromophoreAbsorber(string name, double concentration, ChromophoreCoefficientType chromophoreCoefficientType)
{
Name = name;
Concentration = concentration;
ChromophoreCoefficientType = chromophoreCoefficientType;
}
/// <summary>
/// Constructor to create the chromophore spectrum starting with empty lists
/// </summary>
/// <param name="name">The name of the chromophore absorber</param>
/// <param name="coeffType">The chromophore coefficient type</param>
/// <param name="absUnits">The absorption coefficient units</param>
/// <param name="molarUnit">The molar units</param>
/// <param name="wavelengthUnit">The wavelength units</param>
public ChromophoreSpectrum(string name, ChromophoreCoefficientType coeffType, AbsorptionCoefficientUnit absUnits, MolarUnit molarUnit, WavelengthUnit wavelengthUnit)
: this(new List <double>(), new List <double>(), name, coeffType, absUnits, molarUnit, wavelengthUnit)
{
}
