/// <summary>
///
/// </summary>
/// <param name="nChain">The peptide that will be constitute the N-terminal region of the resultant spliced peptide</param>
/// <param name="cChain">The peptide that will be constitute the C-terminal region of the resultant spliced peptide</param>
/// <param name="nInclude">The included portion of the N-terminal peptide</param>
/// <param name="cInclude">The included portion of hte C-terminal peptide</param>
/// <param name="nAlignNullable">The region to align on prior to splicing</param>
/// <param name="cAlignNullable">The region to align on prior to splicing</param>
/// <returns></returns>
public static IChain GetPeptide(IChain nChain, IChain cChain, Range nInclude, Range cInclude, Range?nAlignNullable = null, Range?cAlignNullable = null)
{
bool performAlignment = nAlignNullable != null && cAlignNullable != null;
Range nAlign = performAlignment ? new Range((Range)nAlignNullable) : new Range();
Range cAlign = performAlignment ? new Range((Range)cAlignNullable) : new Range();
if (performAlignment && ((Range)nAlignNullable).Length != ((Range)cAlignNullable).Length)
{
throw new ArgumentException("Splice ranges must be of equal length");
}
if (nInclude.Start < 0 || nChain.Count <= nInclude.End || cInclude.Start < 0 || cChain.Count <= cInclude.End)
{
throw new IndexOutOfRangeException("Splice ranges exceed the peptide ranges");
}
IChain chain = new Chain();
//float rmsd = Rmsd.GetRmsd(cTerminus[cAlign.Start, cAlign.End], nTerminus[nAlign.Start, nAlign.End]);
Matrix cTerminusTransform = performAlignment ? Rmsd.GetRmsdTransform(cChain[cAlign.Start, cAlign.End], nChain[nAlign.Start, nAlign.End]) : Matrix.Identity;
cTerminusTransform.Rotation.Normalize();
//Quaternion rotation = cTerminusTransform.Rotation;
//rotation.Normalize();
//cTerminusTransform.Rotation = rotation;
for (int i = nInclude.Start; i <= nInclude.End; i++)
{
chain.Add(new Aa(nChain[i]));
}
for (int i = cInclude.Start; i <= cInclude.End; i++)
{
IAa residue = new Aa(cChain[i]);
residue.Transform(cTerminusTransform);
chain.Add(residue);
}
return(chain);
}
static void Main(string[] args)
{
byte effort = 0;
var chain = new Chain(effort);
var block1 = chain.Add(new Coin(300F));
var block2 = chain.Add(new Coin(400F));
var block3 = chain.Add(new Coin(500F));
var separator = (new string('-', 10)) + "\n";
Console.WriteLine("Genesis Block");
Console.WriteLine(chain.GenesisBlock.Dump());
Console.WriteLine(separator);
foreach (var block in chain.Blocks)
{
Console.WriteLine(block.Dump());
Console.WriteLine("---");
}
Console.WriteLine($"Check Integrity: {chain.CheckIntegrity()}");
Console.WriteLine(separator);
Console.WriteLine("Simulates a change in the immutable structure of Block");
Console.WriteLine("Set block1.Data to new Coin(666F)");
SetPrivatePropertyValue(block1, "Data", new Coin(666F));
Console.WriteLine(separator);
Console.WriteLine($"Check Integrity: {chain.CheckIntegrity()}");
Console.WriteLine(separator);
Console.Read();
}
void Decomposite(int from, int cur, int lv)
{
var chain = new Chain(from, lv);
chains.Add(chain);
chain.Add(cur);
while (cur != from)
{
var next = cur;
go[cur] = chain;
pos[cur] = chain.Count;
foreach (var to in G[cur])
{
if (to == from)
{
continue;
}
if (maxsize[cur] == subtreeSize[to])
{
maxsize[cur] = -1;
next = to;
chain.Add(to);
}
else
{
Decomposite(cur, to, lv + 1);
}
}
from = cur;
cur = next;
}
chain.Init();
}
public void CheckTest()
{
var chain = new Chain();
chain.Add("hello, world", "Admin");
chain.Add("code blog", "developer");
Assert.IsTrue(chain.Check());
}
public void CheckTest()
{
var chain = new Chain();
chain.Add("Hello, world!", "Admin");
chain.Add("Code blog", "Shwanov");
Assert.IsTrue(chain.Check());
}
public void CheckTest()
{
var chain = new Chain();
chain.Add("Approach", "Leski");
chain.Add("Appear", "Leski");
Assert.IsTrue(chain.Check());
}
public void CheckTest()
{
var chain = new Chain();
chain.Add("hello world", "admin");
chain.Add("code blog", "kirill");
Assert.IsTrue(chain.Check());
}
public void CheckTest()
{
var chain = new Chain();
chain.Add("bla", "Michael");
chain.Add("bla bla", "Alex");
chain.Add("bla bla bla", "Tom");
Assert.IsTrue(chain.Check());
}
public void ChainAddTest()
{
Chain chain = new Chain(new Election("Выборы на пост главного дворника", DateTime.Parse("10.10.2019 20:00:00"), DateTime.Parse("10.12.2019 20:00:00")));
Assert.IsFalse(chain.Add(null, new Candidate()));
Assert.IsFalse(chain.Add(new User(), null));
//Assert.IsTrue(chain.Add(new User(), new Candidate()));
}
public void ProcessPendingTransactions(string minerAddress)
{
PendingTransactions.Insert(0, Transaction.GetCoinBaseTransaction(minerAddress, (_reward * PendingTransactions.Count) / (32 - _difficulty)));
var createdBlock = CreateBlock();
Chain.Add(createdBlock);
}
public void AddGenesisBlock(string type)
{
switch (type)
{
case "credentrails":
BlockchainCredentials bcCredentials = new BlockchainCredentials();
Chain.Add(new Block(DateTime.Now, null, bcCredentials));
break;
case "data":
BlockchainData bcData = new BlockchainData();
Chain.Add(new Block(DateTime.Now, null, bcData));
break;
case "reports":
BlockchainReports bcReports = new BlockchainReports();
Chain.Add(new Block(DateTime.Now, null, bcReports));
break;
case "ratings":
BlockchainRatings bcRatings = new BlockchainRatings();
Chain.Add(new Block(DateTime.Now, null, bcRatings));
break;
}
}
public void BlockVerify(Block block)
{
lock (Chain)
{
Chain.Add(block);
}
lock (TransactionPool)
{
var ids = block.Transactions.Select(x => x.Id).ToArray();
TransactionPool.RemoveTxs(ids);
}
lock (Utxos)
{
var inEntries = block.Transactions.SelectMany(x => x.Inputs);
Utxos.RemoveAll(x =>
inEntries.Any(inEntry =>
inEntry.OutputIndex == x.OutIndex &&
inEntry.TransactionId.Equals(x.TransactionId)));
var utxos =
block.Transactions
.Select(x => (x.Outputs, x.Id))
.SelectMany(x => ToTxO(x.Outputs, x.Id));
Utxos.AddRange(utxos);
}
//if(Chain.Count % 100 == 0) Difficulty.CalculateNextDifficulty()
Applied?.Invoke();
}
public void ChainTest()
{
var chain = new Chain();
chain.Add("Code blog", "Admin");
Assert.AreEqual("Code blog", chain.Last.Data);
}
public void CreateInitialBlock()
{
var block = new Block(DateTime.Now, null, null);
block.Mine(Difficulty);
Chain.Add(block);
}
public void ChainingTest()
{
Person person0 = new Person("", "", DateTime.Now);
Wallet wallet0 = new Wallet();
Data.Data data0 = new Data.Data(person0, wallet0);
//First Data
Person person1 = new Person("Monroe Jamal", "Budapest",
new DateTime(1979, 1, 21));
Wallet wallet1 = new Wallet();
Data.Data data1 = new Data.Data(person1, wallet1);
//Second Data
Person person2 = new Person("Wood Dario", "Debrecen",
new DateTime(1997, 4, 2));
Wallet wallet2 = new Wallet();
Data.Data data2 = new Data.Data(person2, wallet2);
//Third Data
Person person3 = new Person("Weiss Ella", "Debrecen",
new DateTime(1993, 10, 10));
Wallet wallet3 = new Wallet();
Data.Data data3 = new Data.Data(person3, wallet3);
//Fourth Data
Person person4 = new Person("Patricia T. Smith", "Pécs",
new DateTime(1999, 2, 7));
Wallet wallet4 = new Wallet();
Data.Data data4 = new Data.Data(person4, wallet4);
Block genesis = new Block(data0);
Chain.Add(genesis);
Block block1 = new Block(data1);
Chain.Add(block1);
Block block2 = new Block(data2);
Chain.Add(block2);
Block block3 = new Block(data3);
Chain.Add(block3);
Block block4 = new Block(data4);
Chain.Add(block4);
List <Block> chain = IO.IO.Read <Block>();
Assert.AreEqual(block2.Hash, chain[2].Hash);
}
// add genesis block on chain
public void AddGenesisBlock()
{
Block block = new Block(DateTimeOffset.Now, null, PendingTransactions);
block.Mine(Difficulty);
PendingTransactions = new List <Transaction>();
Chain.Add(block);
}
public void ChainTest()
{
var chain = new Chain();
chain.Add("Impossible", "Leski");
Assert.AreEqual("Impossible", chain.Last.Data);
}
public void AddGenesisBlock()
{
Block genesisBlock = new Block(null, null);
genesisBlock.BlockHash = genesisBlock.CalculateBlockHash();
Chain.Add(genesisBlock);
}
public void ChainTest()
{
var chain = new Chain();
chain.Add("bla bla bla", "Vlad");
Assert.AreEqual(chain.Last.Data, "bla bla bla");
Assert.AreEqual(chain.Last.User, "Vlad");
}
public BlockChain(DateTime?genesisDate = null, int difficulty = 2, int reward = 1_000_000)
{
Block genesisBlock = new Block(genesisDate ?? DateTime.UtcNow, null, null);
genesisBlock.Mine(difficulty);
Difficulty = difficulty;
Reward = reward;
Chain.Add(genesisBlock);
}
public void AddBlock(Block block)
{
Block latestBlock = GetLatestBlock();
block.index = latestBlock.index + 1;
block.previousHash = latestBlock.hash;
block.Mine(this.difficulty);
Chain.Add(block);
}
public void AddBlock(DateTime date, IList <Transaction> transactions)
{
Block lastBlock = Chain.Last();
Block newBlock = new Block(date, lastBlock, transactions);
newBlock.Mine(Difficulty);
AddUsersOfBlock(newBlock);
Chain.Add(newBlock);
}
/// <summary>
/// Adds asequence operation.
/// </summary>
/// <param name="dps">digital pin state to be set</param>
/// <param name="starttime">Time after the last operation or start</param>
public void AddSequenceOperation(DPinState dps, TimeSpan duration)
{
Chain.Add(new SequenceOperation()
{
State = dps,
Duration = duration,
Moment = new TimeSpan(Chain.Sum(o => o.Duration.Ticks))
});
}
public void ChainTest()
{
var chain = new Chain();
chain.Add("Code", "Admin");
Assert.AreEqual(2, chain.Blocks.Count);
Assert.AreEqual("Code", chain.Last.Data);
}
public void AddBlock(Block block)
{
Block latestBlock = GetLatestBlock();
block.Index = latestBlock.Index + 1;
block.PreviousHash = latestBlock.Hash;
block.Mine(Difficulty);
Chain.Add(block);
}
public void AddBlock(Block block)
{
Block latestBlock = GetLatestBlock();
block.Index = latestBlock.Index + 1;
block.PreviousHash = latestBlock.Hash;
block.Hash = block.CalculateHash();
Chain.Add(block);
}
public void Group(int left, int right)
{
Chain init = new Chain();
for (int i = left; i <= right; i++)
{
init.Add(_chain.Devices[i].Clone());
}
List <int> path = Track.GetPath(_chain);
Program.Project.Undo.Add($"Device Grouped", () => {
Chain chain = Track.TraversePath <Chain>(path);
chain.Remove(left);
for (int i = left; i <= right; i++)
{
chain.Insert(i, init[i - left].Clone());
}
Track track = Track.Get(chain);
track?.Window?.Selection.Select(chain[left]);
track?.Window?.Selection.Select(chain[right], true);
}, () => {
Chain chain = Track.TraversePath <Chain>(path);
for (int i = right; i >= left; i--)
{
chain.Remove(i);
}
chain.Insert(left, new Group(new List <Chain>()
{
init.Clone()
})
{
Expanded = 0
});
}, () => {
init.Dispose();
});
for (int i = right; i >= left; i--)
{
_chain.Remove(i);
}
_chain.Insert(left, new Group(new List <Chain>()
{
init.Clone()
})
{
Expanded = 0
});
}
public void AddBlock(Block block)
{
Block latestBlock = GetLatestBlock();
block.Index = latestBlock.Index + 1;
block.PreviousHash = latestBlock.Hash;
//block.Hash = block.CalculateHash();
block.Mine(this.Difficulty);
Chain.Add(block);
}
/// <summary>
/// Used to add the new block to chain
/// </summary>
/// <param name="block"></param>
public void AddBlock(Block block)
{
Block latestBlock = GetLatestBlock();
block.Index = latestBlock.Index + 1;
block.PreviousHash = latestBlock.Hash;
block.Mine(this.Difficulty); // Generate the hash (work of proof)
Chain.Add(block);
}
public void AddBlock(Block block)
{
//Difficulty = GlobalVariables.Difficulty;
Block latestBlock = GetLatestBlock();
block.Index = latestBlock.Index + 1;
block.PreviousHash = latestBlock.Hash;
block.Mine(GlobalVariables.Difficulty);
Chain.Add(block);
}
protected AbstractRule()
{
myChain = new Chain<char>();
myChain.Add(new Handler<char>(Constants.ASCII_LF, HandleNewline, true));
myChain.Add(new Handler<char>(StopIfBozo));
}
private List<Chain> GetMatches()
{
var matches = new List<Chain>();
for (var y = 0; y < Height; y++)
{
for (var x = 0; x < Width - 2;)
{
var animal = GetAnimalAt(x, y);
if (animal == null || !SpeciesMatch(x + 1, y, animal.Species) || !SpeciesMatch(x + 2, y, animal.Species))
{
x++;
continue;
}
var chain = new Chain(ChainType.Horizontal);
do chain.Add(GetAnimalAt(x++, y));
while (x < Width && SpeciesMatch(x, y, animal.Species));
matches.Add(chain);
}
}
for (var x = 0; x < Width; x++)
{
for (var y = 0; y < Height - 2;)
{
var animal = GetAnimalAt(x, y);
if (animal == null || !SpeciesMatch(x, y + 1, animal.Species) || !SpeciesMatch(x, y + 2, animal.Species))
{
y++;
continue;
}
var chain = new Chain(ChainType.Vertical);
do chain.Add(GetAnimalAt(x, y++));
while (y < Height && SpeciesMatch(x, y, animal.Species));
matches.Add(chain);
}
}
return matches;
}
public Context()
{
rules = new List<IRule>();
rules.Add(new HeightRule());
rules.Add(new WidthRule());
rules.Add(new OneStatementPerLineRule());
rules.Add(new OneLinePerStatementRule());
rules.Add(new MethodHeightRule());
rules.Add(new VariableLenghtRule());
setupChain = new Chain<char>();
setupChain.Add(new Handler<char>('\'', HandleCharDefinition, true));
setupChain.Add(new Handler<char>('"', HandleStringDefinition, true));
setupChain.Add(new Handler<char>('#', HandleDirectiveDefinition, true));
setupChain.Add(new Handler<char>('/', HandleSlash, true));
setupChain.Add(new Handler<char>('*', HandleStar, true));
teardownChain = new Chain<char>();
teardownChain.Add(new Handler<char>(Constants.ASCII_LF, HandleNewLine, true));
}