private string _generateReviewTitle(string messageContent)
{
// Uses the first two words in the submission text as the review title.
// In most cases, this should be the species name.
if (string.IsNullOrEmpty(messageContent))
{
return(string.Empty);
}
Match m = Regex.Match(messageContent.Trim(), @"^[^\s]+\s+[^\s]+", RegexOptions.Multiline);
if (m.Success && !string.IsNullOrWhiteSpace(m.Value))
{
return(BinomialName.Parse(m.Value).ToString(BinomialNameFormat.Abbreviated));
}
return(string.Empty);
}
public async Task <ISpecies> ReplySpeciesSuggestionAsync(string genusName, string speciesName)
{
int minimumDistance = int.MaxValue;
ISpecies suggestion = null;
foreach (ISpecies species in await Db.GetSpeciesAsync())
{
int dist = StringUtilities.GetLevenshteinDistance(speciesName.ToLowerInvariant(), species.Name.ToLowerInvariant());
if (dist < minimumDistance)
{
minimumDistance = dist;
suggestion = species;
}
}
return(await ReplyNoSuchTaxonExistsAsync(BinomialName.Parse(genusName, speciesName).ToString(), suggestion) as ISpecies);
}
public void TestSpeciesOnlyWithBeginningAndTrailingPeriod()
{
IBinomialName pair = BinomialName.Parse(string.Empty, ".aspersum.");
Assert.AreEqual(pair.ToString(), ".aspersum.");
}
public void TestSpeciesOnly()
{
IBinomialName pair = BinomialName.Parse(string.Empty, "aspersum");
Assert.AreEqual(pair.ToString(), "aspersum");
}
public void TestAbbrieviatedGenusCombinedWithSpeciesWithBeginningPeriod()
{
IBinomialName pair = BinomialName.Parse(string.Empty, "c.aspersum.");
Assert.AreEqual(pair.ToString(), "C. aspersum.");
}
public void TestAbbrieviatedGenusWithoutPeriodAndSpecies()
{
IBinomialName pair = BinomialName.Parse("c", "aspersum");
Assert.AreEqual(pair.ToString(), "C. aspersum");
}
public void TestFullGenusAndSpecies()
{
IBinomialName pair = BinomialName.Parse("cornu", "aspersum");
Assert.AreEqual(pair.ToString(), "Cornu aspersum");
}
public async Task <ISpeciesAmbiguityResolverResult> Resolve2SpeciesAsync(string arg0, string arg1, string arg2, AmbiguityResolverOptions options = AmbiguityResolverOptions.None)
{
// 1. <genus> <species> <species>
IEnumerable <ISpecies> matchingSpecies = await database.GetSpeciesAsync(arg0, arg1);
IEnumerable <ISpecies> species1 = Enumerable.Empty <ISpecies>();
IEnumerable <ISpecies> species2 = Enumerable.Empty <ISpecies>();
string suggestionHint = string.Empty;
if (matchingSpecies.Count() > 1)
{
// We got multiple matches for the first species (including the genus).
// We will fail immediately as there is no way for this to be unambiguous.
return(new SpeciesAmbiguityResolverResult(matchingSpecies, species2, suggestionHint));
}
else if (matchingSpecies.Count() == 1)
{
// We got a single match for the first species (including the genus).
species1 = matchingSpecies;
matchingSpecies = await database.GetSpeciesAsync(arg2);
if (matchingSpecies.Count() > 1)
{
// We got multiple matches for the second species (without the genus).
// We won't fail immediately, because we might get an unambiguous match by including the genus.
species2 = matchingSpecies;
}
else if (matchingSpecies.Count() == 1)
{
// We got a single match for the second species (without the genus).
// We have unambiguously determined both species, so return the result.
species2 = matchingSpecies;
if (species1 != null && species2 != null)
{
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint));
}
}
else
{
suggestionHint = arg2;
}
}
// 2. <species> <genus> <species>
matchingSpecies = await database.GetSpeciesAsync(arg0);
if (matchingSpecies.Count() > 1)
{
// We got multiple matches for the first species (without the genus).
// We will fail immediately as there is no way for this to be unambiguous.
return(new SpeciesAmbiguityResolverResult(matchingSpecies, species2, suggestionHint));
}
else if (matchingSpecies.Count() == 1)
{
// We got a single match for the first species (without the genus).
// This leaves us with two possible cases for the second species.
species1 = matchingSpecies;
// 2.1. <species> <genus> <species>
matchingSpecies = await database.GetSpeciesAsync(arg1, arg2);
species2 = matchingSpecies;
if (matchingSpecies.Count() == 1)
{
// We got a single match for the second species (with the genus).
// We have unambiguously determined both species, so return the result.
species2 = matchingSpecies;
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint));
}
else if (matchingSpecies.Count() <= 0 && options.HasFlag(AmbiguityResolverOptions.AllowExtra))
{
// 2.2. <species> <species> <extra>
// We didn't get any matches for the second species by including the genus, so try to get a match with just the species.
matchingSpecies = await database.GetSpeciesAsync(arg1);
species2 = matchingSpecies;
if (matchingSpecies.Count() == 1)
{
// We got a single match for the second species (without the genus).
// We have unambiguously determined both species, so return the result.
species2 = matchingSpecies;
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint, arg2));
}
}
else
{
suggestionHint = BinomialName.Parse(arg1, arg2).ToString();
}
}
// If we get here, we were not able to unambiguously figure out what the intended species are, or one of them didn't exist.
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint));
}
public async Task <ISpeciesAmbiguityResolverResult> Resolve2SpeciesAsync(string arg0, string arg1, string arg2, string arg3, AmbiguityResolverOptions options = AmbiguityResolverOptions.None)
{
// 1. <genus> <species> <?> <?>
IEnumerable <ISpecies> matchingSpecies = await database.GetSpeciesAsync(arg0, arg1);
IEnumerable <ISpecies> species1 = Enumerable.Empty <ISpecies>();
IEnumerable <ISpecies> species2 = Enumerable.Empty <ISpecies>();
string suggestionHint = string.Empty;
if (matchingSpecies.Count() > 1)
{
// We got multiple matches for the first species (including the genus).
// We will fail immediately as there is no way for this to be unambiguous.
return(new SpeciesAmbiguityResolverResult(matchingSpecies, species2, suggestionHint));
}
else if (matchingSpecies.Count() == 1)
{
// We got a single match for the first species (including the genus).
species1 = matchingSpecies;
// 1.2. <genus> <species> <genus> <species>
matchingSpecies = await database.GetSpeciesAsync(arg2, arg3);
if (matchingSpecies.Count() > 1)
{
// We got multiple matches for the second species (including the genus).
// We will fail immediately as there is no way for this to be unambiguous.
return(new SpeciesAmbiguityResolverResult(species1, matchingSpecies, suggestionHint));
}
else if (matchingSpecies.Count() == 1)
{
// We got a single match for the second species (including the genus).
// We have unambiguously determined both species, so return the result.
species2 = matchingSpecies;
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint));
}
else if (matchingSpecies.Count() <= 0 && options.HasFlag(AmbiguityResolverOptions.AllowExtra))
{
// 1.3. <genus> <species> <species> <extra>
// We didn't get any matches for the second species (including the genus).
matchingSpecies = await database.GetSpeciesAsync(arg2);
if (matchingSpecies.Count() == 1)
{
// We got a single match for the second species (without the genus).
// We have unambiguously determined both species, so return the result.
species2 = matchingSpecies;
return(new SpeciesAmbiguityResolverResult(species1, species2, arg3));
}
else if (matchingSpecies.Count() > 1)
{
// We got multiple matches for the second species (without the genus).
return(new SpeciesAmbiguityResolverResult(species1, matchingSpecies, suggestionHint));
}
}
else
{
suggestionHint = BinomialName.Parse(arg2, arg3).ToString();
}
}
else
{
// We didn't get any match for the first species (including the genus).
matchingSpecies = await database.GetSpeciesAsync(arg0);
if (matchingSpecies.Count() > 1)
{
// If this is ambiguous, we can't determine the first species at all.
return(new SpeciesAmbiguityResolverResult(matchingSpecies, species2, suggestionHint));
}
else if (matchingSpecies.Count() == 1)
{
// We must have something of the following form:
// <species> <genus> <species> <notes>
species1 = matchingSpecies;
species2 = await database.GetSpeciesAsync(arg1, arg2);
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint, arg3));
}
}
// If we get here, we were not able to unambiguously figure out what the intended species are, or one of them didn't exist.
return(new SpeciesAmbiguityResolverResult(species1, species2, suggestionHint));
}
