/// <summary>
/// Initializes the CTSManager and Parses the Query Params
/// </summary>
protected override void Init()
{
base.Init();
ParsedReqUrlParams = new NciUrl(true, true, true); //We need this to be lowercase and collapse duplicate params. (Or not use an NCI URL)
ParsedReqUrlParams.SetUrl(this.Request.Url.Query);
//////////////////////////////
// Create an instance of a BasicCTSManager.
ClinicalTrialsAPIClient apiClient = APIClientHelper.GetV1ClientInstance();
CTSManager = new BasicCTSManager(apiClient);
/////////////////////////////
// Parse the Query to get the search params.
try
{
// Get mapping file names from configuration
TrialTermLookupConfig mappingConfig = new TrialTermLookupConfig();
mappingConfig.MappingFiles.AddRange(Config.MappingFiles.Select(fp => HttpContext.Current.Server.MapPath(fp)));
CTSSearchParamFactory factory = new CTSSearchParamFactory(new TrialTermLookupService(mappingConfig, apiClient), new ZipCodeGeoLookup());
SearchParams = factory.Create(ParsedReqUrlParams);
}
catch (Exception ex)
{
log.Error("could not parse the CTS search parameters", ex);
throw ex;
}
///////////////////////////
// Parse the page specific parameters
if (IsInUrl(ParsedReqUrlParams, "pn"))
{
this._pageNum = ParsedReqUrlParams.CTSParamAsInt("pn", 1);
}
_itemsPerPage = Config.DefaultItemsPerPage;
if (IsInUrl(ParsedReqUrlParams, "ni"))
{
this._itemsPerPage = ParsedReqUrlParams.CTSParamAsInt("ni", _itemsPerPage);
}
}
protected sealed override void OnInit(EventArgs e)
{
base.OnInit(e);
this.LoadConfig();
//This is referenced by the listing page templates. Those templates
//should be updated to reference the Page Number directly.
this.SearchParams = new VelocitySearchParams(this);
//Set our default items per page based on the config
_itemsPerPage = this.GetItemsPerPage();
//Using NciUrl for handling parameters instead of raw URL query
//This is mainly for pagination
ParsedReqUrlParams = new NciUrl(true, true, true); //We need this to be lowercase and collapse duplicate params. (Or not use an NCI URL)
ParsedReqUrlParams.SetUrl(this.Request.Url.Query);
_basicCTSManager = new BasicCTSManager(APIClientHelper.GetV1ClientInstance());
}
/// <summary>
/// CTSSearchParams -> filterCriterea mapping tests
/// </summary>
/// <param name="searchParams">An instance of a CTSSearchParams object</param>
/// <param name="expectedCriteria">The expected criteria for the search</param>
private void MappingTest(CTSSearchParams searchParams, Dictionary <string, object> expectedCriteria)
{
Dictionary <string, object> actualCriteria = null;
//When search gets called trap the criteria and set the actualCriteria
var mockClient = GetClientMock(
(filterCriteria, size, from, include, exclude) => actualCriteria = filterCriteria,
new ClinicalTrialsCollection()
{
TotalResults = 0, Trials = new ClinicalTrial[] { }
}
);
//Create a new instance of the factory, passing in the Mock's version of an implementation
//of our IClinicalTrialsAPIClient interface.
BasicCTSManager manager = new BasicCTSManager(mockClient.Object);
//Get the results of parsing the URL
ClinicalTrialsCollection returnedCol = manager.Search(searchParams);
//Test the actual result to the expected. NOTE: If you add fields to the CTSSearchParams, you need
//to also modify the comparer
Assert.Equal(expectedCriteria, actualCriteria);
}
/// <summary>
/// Create a collection of URL elements from a CSV file of dictionary entries
/// </summary>
/// <returns>SitemapUrlSet</returns>
public override SitemapUrlSet GetSitemapUrls(string sitemapName)
{
List <SitemapUrl> sitemapUrls = new List <SitemapUrl>();
_config = BasicCTSPageInfo.GetConfig();
if (_config == null)
{
log.Error("Unable to read CTSPageInfo config file.");
throw new Exception();
}
string path = _config.SitemapStore;
if (path != null)
{
String file = HttpContext.Current.Server.MapPath(path);
List <string> trialIDs = new List <string>();
List <string> validTrials = null;
try
{
using (StreamReader sr = new StreamReader(file))
{
string currentLine;
// currentLine will be null when the StreamReader reaches the end of file
while ((currentLine = sr.ReadLine()) != null)
{
if (currentLine.Length > 0)
{
trialIDs.Add(currentLine);
}
else
{
log.ErrorFormat("Error in clinical trials sitemap file {0} for line {1} : invalid syntax.", file, currentLine);
continue;
}
}
}
}
catch (Exception e)
{
log.ErrorFormat("Error in ClinicalTrialsSitemapUrlStore: unable to read dictionary sitemap file located at {0}.", file);
return(new SitemapUrlSet());
}
try
{
BasicCTSManager _basicCTSManager = new BasicCTSManager(APIClientHelper.GetV1ClientInstance());
validTrials = _basicCTSManager.GetActiveTrialIDs(trialIDs).ToList();
}
catch
{
log.ErrorFormat("Error in clinical trials sitemap file {0} : invalid clinical trial IDs", file);
return(new SitemapUrlSet());
}
if (validTrials != null)
{
foreach (string ID in validTrials)
{
string entryUrl = GetSitemapUrl(ID);
double priority = 0.5;
sitemapUrls.Add(new SitemapUrl(entryUrl, sitemapChangeFreq.weekly, priority));
}
}
return(new SitemapUrlSet(sitemapUrls));
}
else
{
log.ErrorFormat("Could not load clinical trials provider file located at {0}.", path);
return(new SitemapUrlSet());
}
}
