private Dictionary <string, IFileLocation> MapSampleNameToBam(List <IFileLocation> bams)
{
var map = new Dictionary <string, IFileLocation>();
foreach (IFileLocation bam in bams)
{
BamReader.WrapException(bam, reader => map.Add(reader.GetReadGroupSample(), bam));
}
return(map);
}
private static IParsingResult <SmallPedigreeSampleOptions> Parse(IFileLocation bam, SampleType sampleType, string sampleName)
{
if (sampleName == null)
{
Action a = () =>
{
BamReader.WrapException(bam, reader =>
{
sampleName = reader.GetReadGroupSample();
});
};
if (!a.Try(out Exception e))
{
return(ParsingResult <SmallPedigreeSampleOptions> .FailedResult(e.Message));
}
}
return(ParsingResult <SmallPedigreeSampleOptions> .SuccessfulResult(new SmallPedigreeSampleOptions(sampleName, sampleType, bam)));
}
