//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: public void start(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
public override void start(BCF2Encoder encoder, VariantContext vc)
{
// the only value that is dynamic are integers
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final java.util.List<Integer> values = new java.util.ArrayList<Integer>(vc.getNSamples());
IList <int?> values = new List <int?>(vc.NSamples);
foreach (Genotype g in vc.Genotypes)
{
foreach (Object i in BCF2Utils.toList(g.getExtendedAttribute(Field, null)))
{
if (i != null) // we know they are all integers
{
values.Add((int?)i);
}
}
}
encodingType = BCF2Utils.determineIntegerType(values);
base.start(encoder, vc);
}