/// <summary>
/// Validate a Azure Blast Service Request without setting any config parameters.
/// Input : Invalid config parameters.
/// Output : Invalidate request status.
/// </summary>
public void InvalidateAzureWebServiceRequestStatusWithoutConfigPams()
{
// Gets the search query parameter and their values.
string alphabet = utilityObj.xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.AlphabetNameNode);
string querySequence = utilityObj.xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.QuerySequency);
Sequence seq = new Sequence(Utility.GetAlphabet(alphabet), querySequence);
string reqId = string.Empty;
// Set Service confiruration parameters true.
AzureBlastHandler service = new AzureBlastHandler();
// Dispose Azure Blast Handler.
service.Dispose();
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 1;
configParams.Connection = new Uri(Constants.AzureUri);
service.Configuration = configParams;
BlastParameters searchParams = new BlastParameters();
// Get Request identifier from web service.
try
{
reqId = service.SubmitRequest(seq, searchParams);
Assert.IsTrue(string.IsNullOrEmpty(reqId));
Assert.Fail();
}
catch (WebException)
{
ApplicationLog.WriteLine("AzureWebService P2 : Successfully validated the exception");
Console.WriteLine("AzureWebService P2 : Successfully validated the exception");
}
}
/// <summary>
/// Get Request Status
/// </summary>
/// <param name="blastParameters">Blast Input config parameters</param>
/// <returns></returns>
private TestCaseOutput GetRequestStatus(Dictionary <string, object> blastParameters)
{
// Get the input query string
string sequenceString = blastParameters[Constants.QuerySeqString] as string;
Sequence sequence = new Sequence(Alphabets.DNA, sequenceString);
// Set NCBIHandler configuration services
IBlastServiceHandler service = null;
object requestStatus = null;
try
{
service = new AzureBlastHandler();
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 5;
configParams.Connection = new Uri(Constants.AzureUri);
service.Configuration = configParams;
BlastParameters blastSearchPams = blastParameters[Constants.BlastParmsConst]
as BlastParameters;
// Get Request identifier from web service.
string reqId = service.SubmitRequest(sequence, blastSearchPams);
// Get request information for first time.
requestStatus = service.GetRequestStatus(reqId);
}
finally
{
if (service != null)
{
((IDisposable)service).Dispose();
}
}
return(new TestCaseOutput(requestStatus, false));
}
/// <summary>
/// Validate the Azure Blast Service Request status Queued.
/// Input : Invalid request parameters.
/// Output : Invalidate request status.
/// </summary>
public void InvalidateAzureWebServiceRequestStatus()
{
// Gets the search query parameter and their values.
string queryProgramValue = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramValue);
string queryDatabaseParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseParameter);
string queryDatabaseValue = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseValue);
string queryProgramParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramParameter);
string reqId = string.Empty;
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 1;
configParams.RetryInterval = 10;
configParams.RetryCount = 1;
configParams.Connection = new Uri(Constants.AzureUri);
// Create search parameters object.
BlastParameters searchParams = new BlastParameters();
// Add mandatory parameter values to search query parameters.
searchParams.Add(queryProgramParameter, queryProgramValue);
searchParams.Add(queryDatabaseParameter, queryDatabaseValue);
IBlastServiceHandler service = null;
try
{
service = new AzureBlastHandler(configParams);
// Set Service confiruration parameters true.
service.Configuration = configParams;
// Get Request identifier from web service.
//reqId = service.SubmitRequest(seq, searchParams);
}
catch (WebException ex)
{
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"AzureWebService P2 : Connection Failed with the error '{0}'", ex.Message));
Console.WriteLine(string.Format((IFormatProvider)null,
"AzureWebService P2 : Connection Failed with the error '{0}'", ex.Message));
Assert.Inconclusive("Test case ignored due to connection failure");
}
finally
{
if (service != null)
{
((IDisposable)service).Dispose();
}
}
try
{
object responseResults = service.FetchResultsSync(reqId, searchParams);
Assert.IsNotNull(responseResults);
Assert.Fail();
}
catch (WebException)
{
ApplicationLog.WriteLine("AzureWebService P2 : Successfully validated the exception");
Console.WriteLine("AzureWebService P2 : Successfully validated the exception");
}
}
/// <summary>
/// Validates general Add method test cases with the xml node name specified.
/// </summary>
/// <param name="nodeName">xml node name.</param>
/// <param name="isSyncFetch">True for Synchronous fetch</param>
void GeneralMethodToValidateResults(string nodeName, bool isSyncFetch)
{
// Gets the search query parameter and their values.
string alphabet = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.AlphabetNameNode);
string querySequence = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.QuerySequency);
string queryDatabaseValue = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DatabaseValue);
string queryProgramValue = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ProgramValue);
string queryDatabaseParameter = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DatabaseParameter);
string queryProgramParameter = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ProgramParameter);
string expectedHitId = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.HitID);
string expectedAccession = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.HitAccession);
string expectedResultCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ResultsCount);
string expectedHitsCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.HitsCount);
string expectedEntropyStatistics = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.EntropyStatistics);
string expectedKappaStatistics = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.KappaStatistics);
string expectedLambdaStatistics = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.LambdaStatistics);
string expectedHspHitsCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.HspHitsCount);
string expectedSleepTime = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.SleepTime);
string reqId = string.Empty;
object responseResults = null;
int maxAttempts = 20;
int attempt = 1;
Sequence seq = new Sequence(Utility.GetAlphabet(alphabet), querySequence);
// Set Service confiruration parameters true.
IBlastServiceHandler service = new AzureBlastHandler();
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 5;
configParams.Connection = new Uri(Constants.AzureUri);
service.Configuration = configParams;
// Create search parameters object.
BlastParameters searchParams = new BlastParameters();
// Add mandatory parameter values to search query parameters.
searchParams.Add(queryProgramParameter, queryProgramValue);
searchParams.Add(queryDatabaseParameter, queryDatabaseValue);
// Get Request identifier from web service.
reqId = service.SubmitRequest(seq, searchParams);
// Get request information for first time.
ServiceRequestInformation info = service.GetRequestStatus(reqId);
// Ping service until request staus is ready.
while (attempt <= maxAttempts && info.Status != ServiceRequestStatus.Ready &&
info.Status != ServiceRequestStatus.Error)
{
System.Threading.Thread.Sleep(Convert.ToInt32(expectedSleepTime, (IFormatProvider)null));
++attempt;
info = service.GetRequestStatus(reqId);
}
// Get results.
if (isSyncFetch)
{
responseResults = service.FetchResultsSync(reqId, searchParams);
}
else
{
responseResults = service.GetResult(reqId, searchParams);
}
Assert.IsNotNull(responseResults);
if (!isSyncFetch)
{
//Parse and validate results
BlastXmlParser parser = new BlastXmlParser();
IList <BlastResult> blastResults =
parser.Parse(new StringReader(responseResults.ToString()));
Assert.AreEqual(blastResults.Count.ToString(
(IFormatProvider)null), expectedHitsCount);
Assert.AreEqual(blastResults[0].Records.Count.ToString(
(IFormatProvider)null), expectedHitsCount);
BlastSearchRecord record = blastResults[0].Records[0];
Assert.AreEqual(record.Statistics.Kappa.ToString(
(IFormatProvider)null), expectedKappaStatistics);
Assert.AreEqual(record.Statistics.Lambda.ToString(
(IFormatProvider)null), expectedLambdaStatistics);
Assert.AreEqual(record.Statistics.Entropy.ToString(
(IFormatProvider)null), expectedEntropyStatistics);
Assert.AreEqual(record.Hits.Count.ToString(
(IFormatProvider)null), expectedResultCount);
Hit hit = record.Hits[0];
Assert.AreEqual(hit.Accession, expectedAccession);
Assert.AreEqual(hit.Id.ToString((IFormatProvider)null), expectedHitId);
Assert.AreEqual(hit.Hsps.Count.ToString((IFormatProvider)null), expectedHspHitsCount);
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Azure Blast BVT: Hits Count '{0}'.", hit.Hsps.Count));
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Azure Blast BVT: Hits Count '{0}'.", hit.Hsps.Count));
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Azure Blast BVT: Hits count '{0}'.", blastResults.Count));
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Azure Blast BVT: Accession '{0}'.", hit.Accession));
}
}
/// <summary>
/// Validate the Azure Blast Service Request status Queued.
/// Input : Invalid request parameters.
/// Output : Invalidate request status.
/// </summary>
public void InvalidateAzureWebServiceRequestStatus()
{
// Gets the search query parameter and their values.
string alphabet = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.AlphabetNameNode);
string querySequence = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.QuerySequency);
string queryDatabaseValue = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseValue);
string queryProgramValue = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramValue);
string queryDatabaseParameter = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseParameter);
string queryProgramParameter = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramParameter);
string reqId = string.Empty;
Sequence seq = new Sequence(Utility.GetAlphabet(alphabet), querySequence);
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 1;
configParams.RetryInterval = 10;
configParams.RetryCount = 1;
configParams.Connection = new Uri(Constants.AzureUri);
// Set Service confiruration parameters true.
IBlastServiceHandler service = new AzureBlastHandler(configParams);
service.Configuration = configParams;
// Create search parameters object.
BlastParameters searchParams = new BlastParameters();
// Add mandatory parameter values to search query parameters.
searchParams.Add(queryProgramParameter, queryProgramValue);
searchParams.Add(queryDatabaseParameter, queryDatabaseValue);
try
{
// Get Request identifier from web service.
reqId = service.SubmitRequest(seq, searchParams);
}
catch (Exception ex)
{
ApplicationLog.WriteLine(string.Format(
"AzureWebService P2 : Connection Failed with the error '{0}'", ex.Message));
Console.WriteLine(string.Format(
"AzureWebService P2 : Connection Failed with the error '{0}'", ex.Message));
Assert.Ignore("Test case ignored due to connection failure");
}
try
{
object responseResults = service.FetchResultsSync(reqId, searchParams);
Assert.IsNotNull(responseResults);
Assert.Fail();
}
catch (Exception)
{
ApplicationLog.WriteLine("AzureWebService P2 : Successfully validated the exception");
Console.WriteLine("AzureWebService P2 : Successfully validated the exception");
}
}
/// <summary>
/// Validate general http request status by
/// differnt parameters for Azure web service..
/// <param name="nodeName">different alphabet node name</param>
/// </summary>
void ValidateGeneralGetRequestStatusMethod(string nodeName)
{
// Gets the search query parameter and their values.
string alphabet = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.AlphabetNameNode);
string querySequence = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.QuerySequency);
string queryDatabaseValue = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DatabaseValue);
string queryProgramValue = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ProgramValue);
string queryDatabaseParameter = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DatabaseParameter);
string queryProgramParameter = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ProgramParameter);
string reqId = string.Empty;
Sequence seq = new Sequence(Utility.GetAlphabet(alphabet), querySequence);
// Set Service confiruration parameters true.
IBlastServiceHandler service = new AzureBlastHandler();
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 5;
configParams.Connection = new Uri(Constants.AzureUri);
service.Configuration = configParams;
// Create search parameters object.
BlastParameters searchParams = new BlastParameters();
// Add mandatory parameter values to search query parameters.
searchParams.Add(queryProgramParameter, queryProgramValue);
searchParams.Add(queryDatabaseParameter, queryDatabaseValue);
// Get Request identifier from web service.
reqId = service.SubmitRequest(seq, searchParams);
// Get request information for first time.
ServiceRequestInformation reqInfo = service.GetRequestStatus(reqId);
// Validate job status.
if (reqInfo.Status != ServiceRequestStatus.Waiting &&
reqInfo.Status != ServiceRequestStatus.Ready &&
reqInfo.Status != ServiceRequestStatus.Queued)
{
string error = ApplicationLog.WriteLine(string.Concat(
"Unexpected error", reqInfo.Status));
Assert.Fail(error);
Console.WriteLine(string.Concat(
"Azure Blast BVT: Unexpected error ", reqInfo.Status));
}
else
{
Console.WriteLine(string.Format((IFormatProvider)null,
"Azure Blast BVT: Client Request status has been validated successfully."));
Console.WriteLine(string.Concat(
"Azure Blast BVT: Request status ", reqInfo.Status));
}
}
/// <summary>
/// Validate if the connection is successful
/// </summary>
/// <returns>True, if connection is successful</returns>
static bool ValidateWebServiceConnection()
{
// Gets the search query parameter and their values.
string alphabet = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.AlphabetNameNode);
string querySequence = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.QuerySequency);
string queryDatabaseValue = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseValue);
string queryProgramValue = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramValue);
string queryDatabaseParameter = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseParameter);
string queryProgramParameter = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramParameter);
string expectedSleepTime = Utility._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.SleepTime);
string reqId = string.Empty;
object responseResults = null;
int maxAttempts = 20;
int attempt = 1;
Sequence seq = new Sequence(Utility.GetAlphabet(alphabet), querySequence);
// Set Service confiruration parameters true.
IBlastServiceHandler service = new AzureBlastHandler();
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
configParams.DefaultTimeout = 5;
configParams.Connection = new Uri(Constants.AzureUri);
service.Configuration = configParams;
// Create search parameters object.
BlastParameters searchParams = new BlastParameters();
// Add mandatory parameter values to search query parameters.
searchParams.Add(queryProgramParameter, queryProgramValue);
searchParams.Add(queryDatabaseParameter, queryDatabaseValue);
try
{
// Get Request identifier from web service.
reqId = service.SubmitRequest(seq, searchParams);
// Get request information for first time.
ServiceRequestInformation info = service.GetRequestStatus(reqId);
// Ping service until request staus is ready.
while (attempt <= maxAttempts && info.Status != ServiceRequestStatus.Ready &&
info.Status != ServiceRequestStatus.Error)
{
System.Threading.Thread.Sleep(Convert.ToInt32(expectedSleepTime));
++attempt;
info = service.GetRequestStatus(reqId);
}
responseResults = service.GetResult(reqId, searchParams);
if (null == responseResults)
{
Console.WriteLine(
"Azure BVT : Connection not successful with no Response result");
ApplicationLog.WriteLine(
"Azure BVT : Connection not successful with no Response result");
return(false);
}
}
catch (Exception ex)
{
Console.WriteLine(string.Format(
"Azure BVT : Connection not successful with error '{0}'", ex.Message));
ApplicationLog.WriteLine(string.Format(
"Azure BVT : Connection not successful with error '{0}'", ex.Message));
return(false);
}
Console.WriteLine("Azure BVT : Connection Successful");
return(true);
}
