public override void Render(System.Web.Mvc.ViewContext ctx, AtomSite.Domain.Include include)
{
HtmlHelper helper = new HtmlHelper(ctx, new ViewDataContainer() { ViewData = ctx.ViewData });
System.Web.Mvc.Html.RenderPartialExtensions.RenderPartial(helper, Name, new Models.SetupModel { TwitterSettings = TwitterPluginCore.GetCurrent() });
}
public override void Render(System.Web.Mvc.ViewContext ctx, AtomSite.Domain.Include include)
{
var i = new LiteralInclude(include);
ctx.HttpContext.Response.Write(i.Html);
}
public Entry ReadEntry(string cifContent)
{
var mmCifData = new MmCifParser().Parse(cifContent);
Entry entry = new Entry();
// Read Id
entry.Id = mmCifData["_entry"][0]["id"];
// Read Entities
foreach (var mmCifEntity in mmCifData["_entity"])
{
var entity = new Entity(
mmCifEntity["id"],
ConvertToEntityType(mmCifEntity["type"]),
mmCifEntity["pdbx_description"]
);
entry.Entities.Add(entity);
}
// Read Asymmetric Units
foreach (var mmCifAsym in mmCifData["_struct_asym"])
{
var asymUnit = new AsymmetricUnit(
mmCifAsym["id"],
entry.Entities.GetById(mmCifAsym["entity_id"]),
mmCifAsym["details"]
);
entry.AsymetricUnits.Add(asymUnit);
}
// Read Chemical Components
foreach (var mmCifChemComp in mmCifData["_chem_comp"])
{
var chemComp = new ChemicalComponent(
mmCifChemComp["id"],
mmCifChemComp["type"],
mmCifChemComp["name"],
mmCifChemComp["formula"]
);
entry.ChemicalComponents.Add(chemComp);
}
// Read Atom Sites
foreach (var mmCifAtomSite in mmCifData["_atom_site"])
{
var atomSite = new AtomSite(
mmCifAtomSite["id"],
mmCifAtomSite["type_symbol"],
mmCifAtomSite["label_atom_id"],
entry.ChemicalComponents.GetById(mmCifAtomSite["label_comp_id"]),
entry.AsymetricUnits.GetById(mmCifAtomSite["label_asym_id"]),
entry.Entities.GetById(mmCifAtomSite["label_entity_id"]),
mmCifAtomSite["label_seq_id"],
ConvertToFloat(mmCifAtomSite["Cartn_x"]),
ConvertToFloat(mmCifAtomSite["Cartn_y"]),
ConvertToFloat(mmCifAtomSite["Cartn_z"])
);
entry.AtomSites.Add(atomSite);
}
return(entry);
}
public void Notify(AtomSite.Domain.Id entryId, AtomSite.Domain.AtomEntry entry, string slug)
{
throw new NotImplementedException();
}
