public void LossOfHeterozygosityTest()
{
var annotatedVariant = DataUtilities.GetVariant(DataUtilities.EmptyCachePrefix, null,
"1 11131485 Canvas:REF:1:11131486:16833263 N <CNV> 61 PASS SVTYPE=LOH;END=16833263 RC:BC:CN:MCC . 84:9227:2:2");
Assert.NotNull(annotatedVariant);
AssertUtilities.CheckJsonDoesNotContain("\"variantType\":\"loss_of_heterozygosity\"", annotatedVariant);
AssertUtilities.CheckJsonContains("\"variantType\":\"copy_number_variation\"", annotatedVariant);
AssertUtilities.CheckJsonDoesNotContain("\"altAllele\":\"LOH\"", annotatedVariant);
AssertUtilities.CheckSampleCount(2, annotatedVariant);
var sample = JsonUtilities.GetSampleJson(annotatedVariant, 1);
Assert.Contains("lossOfHeterozygosity", sample);
}
