public void AnimlDocumentValidatedCorrectly()
{
//// Create a new minimal AnIML document and add one sample
//// Using "1" as Id should result in a validation error b/c this name is not compliant with the
//// AnIML standard as xsd:ID does not allow numbers as first character
AnimlDocument animlDoc = new AnimlDocument()
{
SampleSet = new SampleSet()
};
animlDoc.SampleSet.Samples.Add(new Sample("TestSample", "1st sample")
{
Id = "1"
});
bool validationOutcome;
AnimlDocumentValidator validatorFail = AnimlDocumentValidator.CreateValidatorForAnimlDocument(animlDoc);
validationOutcome = validatorFail.Validate();
validationOutcome.Should().BeFalse();
validatorFail.ValidationMessages.Should().HaveCount(1);
//// Change the ID to a valid value and perform the validation once again.
animlDoc.SampleSet.Samples[0].Id = "ID-1";
AnimlDocumentValidator validatorSucceed = AnimlDocumentValidator.CreateValidatorForAnimlDocument(animlDoc);
validationOutcome = validatorSucceed.Validate();
validationOutcome.Should().BeTrue();
validatorSucceed.ValidationMessages.Should().BeEmpty();
}
public static void Main(string[] args)
{
List <double> values = GenerateValues(50, 0, 14);
AnimlDocumentBuilder documentBuilder = new AnimlDocumentBuilder()
.WithSampleSet(
new SampleSetBuilder()
.WithId("ID-SampleSet")
.WithSample(
new SampleBuilder("TestSample", "ID-TestSample")
.WithBarcode("B1234567890")
.WithComment("This is a test sample.")
.WithContainerInfo("CONT-123", ContainerType.Determinate, "A/1")
.WithDerived(false)
.WithId("S-1")
.WithSourceDataLocation("http://documentstore/B1234567890/data")
.Build())
.Build())
.WithExperimentStepSet(
new ExperimentStepSetBuilder()
.WithId("ID-ExperimentStepSet")
.WithExperimentStep(
new ExperimentStepBuilder("TestExperimentStep", "ID-ExperimentStep")
.WithComment("This is a test experiment step.")
.WithId("E-1")
.WithInfrastructure(
new InfrastructureBuilder()
.WithTimestamp(DateTime.Now)
.WithSampleReferenceSet(
new SampleReferenceSetBuilder()
.WithSampleReference(new SampleReference("ID-TestSample", "Test sample", SamplePurpose.Consumed))
.Build())
.Build())
.WithMethod(
new MethodBuilder()
.WithAuthor(
new AuthorBuilder("John Doe", UserType.Human)
.WithAffiliation("Black Mesa Corp.")
.WithEmail("*****@*****.**")
.WithLocation("New Mexico")
.WithPhone("+1 505 1234567")
.WithRole("Lab Technician")
.Build())
.WithDevice(
new DeviceBuilder("pH Meter")
.WithDeviceIdentifier("PH-11-1")
.WithFirmwareVersion("1.21a")
.WithManufacturer("pH Meter Manufacturing Corp.")
.WithSerialNumber("PHM0815")
.Build())
.WithId("M-1")
.WithName("pH Value")
.WithSoftware(
new SoftwareBuilder("pH Meter PC Software")
.WithManufacturer("pH Meter Manufacturing Corp.")
.WithOperatingSystem(Environment.OSVersion.ToString())
.WithVersion("2.08")
.Build())
.Build())
.WithResult(
new ResultBuilder("pH")
.WithSeriesSet(
new SeriesSetBuilder("pH Measurement", values.Count)
.WithSeries(
new SeriesBuilder("Time", "SER-PH-TIME", Dependency.Independent, SeriesType.Int32)
.WithId("SER-TIME")
.WithPlotScale(PlotScale.Linear)
.WithUnit(Units.Second)
.WithAutoIncrementedValueSet(0, 1)
.WithVisible(true)
.Build())
.WithSeries(
new SeriesBuilder("pH values", "SER-PH-VALS", Dependency.Dependent, SeriesType.Float64)
.WithId("SER-VALS")
.WithPlotScale(PlotScale.Linear)
.WithUnit(Units.Arbitrary)
.WithEncodedValueSet(values)
.WithVisible(true)
.Build())
.Build())
.Build())
.Build())
.Build());
AnimlDocument document = documentBuilder.Build();
string docString = documentBuilder.Build().ToXml();
//// Print the XML to the console
Console.WriteLine("Generated AnIML document using builders:");
Console.WriteLine("=========================");
Console.WriteLine(docString);
Console.WriteLine();
if (!string.IsNullOrEmpty(outputFilePath))
{
document.SaveAsFile(outputFilePath);
Console.WriteLine("Saved AnIML document to file:");
Console.WriteLine("=========================");
Console.WriteLine($"--> {outputFilePath}");
Console.WriteLine();
}
//// Validate the AnIML document against the AnIML core schema
Console.WriteLine("Validating document against the AnIML Core Schema:");
Console.WriteLine("==================================================");
AnimlDocumentValidator validator = AnimlDocumentValidator.CreateValidatorForAnimlDocumentString(docString);
if (!validator.Validate())
{
Console.WriteLine("Validation failed.");
validator.ValidationMessages.ForEach(Console.WriteLine);
}
else
{
Console.WriteLine("Validation succeeded.");
}
}
static void Main(string[] args)
{
//// Create a new AnimlDocument
AnimlDocument document = new AnimlDocument();
//// Create Sample(s) in the AnimlDocument
CreateSamples(ref document);
//// Create ExperimentStep(s) in the AnimlDocument
CreateExperimentSteps(ref document);
////Create AuditTrailEntry(s) in the AnimlDocument
CreateAuditTrailEntries(ref document);
//// Generate the AnIML document XML from the AnimlDocument object
string docString = document.ToXml();
//// Print the XML to the console
Console.WriteLine("Generated AnIML document:");
Console.WriteLine("=========================");
Console.WriteLine(docString);
Console.WriteLine();
if (!string.IsNullOrEmpty(outputFilePath))
{
document.SaveAsFile(outputFilePath);
Console.WriteLine("Saved AnIML document to file:");
Console.WriteLine("=========================");
Console.WriteLine($"--> {outputFilePath}");
Console.WriteLine();
}
//// Create a new document from the generated XML (to test importing XML)
AnimlDocument document2 = AnimlDocument.ReadFromString(docString);
string docString2 = document2.ToXml();
Console.WriteLine("AnIML document from import:");
Console.WriteLine("=========================");
Console.WriteLine(docString2);
Console.WriteLine();
//// Compare the initial XML with the one after reading from the XML
Console.WriteLine("AnIML documents are equal:");
Console.WriteLine("==========================");
Console.WriteLine(docString.Equals(docString2, StringComparison.Ordinal) ? "YES" : "NO");
Console.WriteLine();
//// Validate the AnIML document against the AnIML core schema
Console.WriteLine("Validating document against the AnIML Core Schema:");
Console.WriteLine("==================================================");
AnimlDocumentValidator validator = AnimlDocumentValidator.CreateValidatorForAnimlDocumentString(docString);
if (!validator.Validate())
{
Console.WriteLine("Validation failed.");
validator.ValidationMessages.ForEach(Console.WriteLine);
}
else
{
Console.WriteLine("Validation succeeded.");
}
}
