private static void TestOverlapIsolationWindowMapper(AbstractIsoWindowMapper isoMapper, MsDataFileImpl file)
{
// ReSharper disable once CollectionNeverQueried.Local
var isoWinList = new List <IsoWin>(); // Useful for debugging
Assert.AreEqual(40, isoMapper.NumWindows);
Assert.AreEqual(41, isoMapper.NumDeconvRegions);
// Check that each isolation window has two overlap regions with mz values that are contained in it
for (int isoIndex = 0; isoIndex < isoMapper.NumWindows; ++isoIndex)
{
IsoWin isoWin = isoMapper.GetIsolationWindow(isoIndex);
isoWinList.Add(isoWin);
Assert.AreEqual(2, isoWin.DeconvRegions.Count);
for (int i = 0; i < isoWin.DeconvRegions.Count; ++i)
{
// Check self-consistency of each deconvRegion in the isolation window
var deconvRegion = isoWin.DeconvRegions[i];
var deconvIndex = deconvRegion.Id;
Assert.AreEqual(deconvRegion.Start, isoMapper.GetDeconvRegion(deconvIndex).Start);
Assert.AreEqual(deconvRegion.Stop, isoMapper.GetDeconvRegion(deconvIndex).Stop);
Assert.AreEqual(deconvRegion.Id, isoMapper.GetDeconvRegion(deconvIndex).Id);
Assert.IsTrue(isoWin.Contains(deconvRegion));
Assert.IsTrue(isoWin.Start <= deconvRegion.Start && isoWin.Stop >= deconvRegion.Stop);
double deconvRegionCenter = (deconvRegion.StartMz + deconvRegion.StopMz) / 2.0;
int newDeconvIndex;
isoMapper.TryGetDeconvFromMz(deconvRegionCenter, out newDeconvIndex);
Assert.AreEqual(deconvIndex, newDeconvIndex);
int[] isosForDeconv;
isoMapper.TryGetIsosForDeconv(deconvIndex, out isosForDeconv);
// 2 isolation windows cover this deconv region, unless it's at beginning or end
int deconvInIsos = deconvRegion.Id == 0 || deconvRegion.Id == isoMapper.NumDeconvRegions - 1 ? 1 : 2;
Assert.IsTrue(isosForDeconv.Length == deconvInIsos);
foreach (var isoForDeconv in isosForDeconv)
{
IsoWin isoWindow = isoMapper.GetIsolationWindow(isoForDeconv);
Assert.IsTrue(isoWindow.Contains(deconvRegion));
}
}
}
}
private static void TestOverlapIsolationWindowMapper(AbstractIsoWindowMapper isoMapper, MsDataFileImpl file)
{
// ReSharper disable once CollectionNeverQueried.Local
var isoWinList = new List<IsoWin>(); // Useful for debugging
Assert.AreEqual(40,isoMapper.NumWindows);
Assert.AreEqual(41,isoMapper.NumDeconvRegions);
// Check that each isolation window has two overlap regions with mz values that are contained in it
for (int isoIndex = 0; isoIndex < isoMapper.NumWindows; ++isoIndex)
{
IsoWin isoWin = isoMapper.GetIsolationWindow(isoIndex);
isoWinList.Add(isoWin);
Assert.AreEqual(2, isoWin.DeconvRegions.Count);
for (int i = 0; i < isoWin.DeconvRegions.Count; ++i)
{
// Check self-consistency of each deconvRegion in the isolation window
var deconvRegion = isoWin.DeconvRegions[i];
var deconvIndex = deconvRegion.Id;
Assert.AreEqual(deconvRegion.Start, isoMapper.GetDeconvRegion(deconvIndex).Start);
Assert.AreEqual(deconvRegion.Stop, isoMapper.GetDeconvRegion(deconvIndex).Stop);
Assert.AreEqual(deconvRegion.Id, isoMapper.GetDeconvRegion(deconvIndex).Id);
Assert.IsTrue(isoWin.Contains(deconvRegion));
Assert.IsTrue(isoWin.Start <= deconvRegion.Start && isoWin.Stop >= deconvRegion.Stop);
double deconvRegionCenter = (deconvRegion.StartMz + deconvRegion.StopMz) / 2.0;
int newDeconvIndex;
isoMapper.TryGetDeconvFromMz(deconvRegionCenter, out newDeconvIndex);
Assert.AreEqual(deconvIndex, newDeconvIndex);
int[] isosForDeconv;
isoMapper.TryGetIsosForDeconv(deconvIndex, out isosForDeconv);
// 2 isolation windows cover this deconv region, unless it's at beginning or end
int deconvInIsos = deconvRegion.Id == 0 || deconvRegion.Id == isoMapper.NumDeconvRegions - 1 ? 1 : 2;
Assert.IsTrue(isosForDeconv.Length == deconvInIsos);
foreach (var isoForDeconv in isosForDeconv)
{
IsoWin isoWindow = isoMapper.GetIsolationWindow(isoForDeconv);
Assert.IsTrue(isoWindow.Contains(deconvRegion));
}
}
}
}
