public static PeptideFileAnalysis EnsurePeptideFileAnalysis(PeptideAnalysis peptideAnalysis, MsDataFile msDataFile)
{
var workspace = peptideAnalysis.Workspace;
using (var session = workspace.OpenSession())
{
var criteria = session.CreateCriteria(typeof(DbPeptideFileAnalysis))
.Add(Restrictions.Eq("PeptideAnalysis", session.Load <DbPeptideAnalysis>(peptideAnalysis.Id)))
.Add(Restrictions.Eq("MsDataFile", session.Load <DbMsDataFile>(msDataFile.Id)));
var dbPeptideAnalysis = (DbPeptideFileAnalysis)criteria.UniqueResult();
if (dbPeptideAnalysis != null)
{
return(GetPeptideFileAnalysis(peptideAnalysis, dbPeptideAnalysis));
}
}
if (!msDataFile.HasTimes())
{
return(null);
}
using (var session = workspace.OpenWriteSession())
{
var dbPeptideAnalysis = session.Load <DbPeptideAnalysis>(peptideAnalysis.Id);
var psmTimesByDataFileId = dbPeptideAnalysis.Peptide.PsmTimesByDataFileId(session);
var dbPeptideFileAnalysis = CreatePeptideFileAnalysis(session, msDataFile, dbPeptideAnalysis, psmTimesByDataFileId);
if (dbPeptideFileAnalysis == null)
{
return(null);
}
session.BeginTransaction();
session.Save(dbPeptideFileAnalysis);
dbPeptideAnalysis.FileAnalysisCount++;
session.Update(dbPeptideAnalysis);
session.Save(new DbChangeLog(peptideAnalysis));
session.Transaction.Commit();
workspace.ChromatogramGenerator.SetRequeryPending();
workspace.DatabasePoller.LoadAndMergeChanges(null);
return(workspace.PeptideAnalyses.FindByKey(dbPeptideAnalysis.GetId())
.FileAnalyses.FindByKey(dbPeptideFileAnalysis.GetId()));
}
}
