private IEnumerable<string> GetCoefficientStrings(EditPeakScoringModelDlg editDlg)
{
for (int i = 0; i < editDlg.PeakCalculatorsGrid.Items.Count; i++)
{
double? weight = editDlg.PeakCalculatorsGrid.Items[i].Weight;
if (weight.HasValue)
yield return string.Format(CultureInfo.InvariantCulture, "{0:F04}", weight.Value);
else
yield return " null "; // To help values line up
}
}
private void ValidateCoefficients(EditPeakScoringModelDlg editDlgFromSrm, int coeffIndex)
{
string coefficients = string.Join(@"|", GetCoefficientStrings(editDlgFromSrm));
if (IsRecordMode)
Console.WriteLine(@"""{0}"", // Not L10N", coefficients); // Not L10N
else
AssertEx.AreEqualLines(EXPECTED_COEFFICIENTS[coeffIndex], coefficients);
}
protected void VerifyScores(EditPeakScoringModelDlg editDlg,
bool isPresent,
Type[] scoreTypes)
{
List<double?> scores;
VerifyScores(editDlg, isPresent, scoreTypes, out scores);
}
protected void VerifyScores(EditPeakScoringModelDlg editDlg,
bool isPresent,
Type[] scoreTypes,
out List<double?> scores)
{
scores = new List<double?>();
foreach (var scoreType in scoreTypes)
{
Assert.AreEqual(IsActiveCalculator(editDlg, scoreType), isPresent);
scores.Add(ValueCalculator(editDlg, scoreType));
}
}
protected bool IsActiveCalculator(EditPeakScoringModelDlg editDlg, Type calcType)
{
var index = GetIndex(editDlg, calcType);
return editDlg.PeakCalculatorsGrid.Items[index].IsEnabled;
}
protected double? ValueCalculator(EditPeakScoringModelDlg editDlg, Type calcType)
{
var index = GetIndex(editDlg, calcType);
return editDlg.PeakCalculatorsGrid.Items[index].Weight;
}
protected int GetIndex(EditPeakScoringModelDlg editDlg, Type calcType)
{
var calculators = editDlg.PeakScoringModel.PeakFeatureCalculators;
var calculator = calculators.FirstOrDefault(calc => calc.GetType() == calcType);
Assert.IsNotNull(calculator);
return calculators.IndexOf(calculator);
}
protected EditPeakScoringModelDlg.HistogramGroup GetHistogramForScoreIndex(EditPeakScoringModelDlg editDlg, int scoreIndex)
{
EditPeakScoringModelDlg.HistogramGroup scoreHistograms;
EditPeakScoringModelDlg.HistogramGroup pValueHistograms;
EditPeakScoringModelDlg.HistogramGroup qValueHistograms;
PointPairList piZeroLine;
editDlg.GetPoints(
scoreIndex,
out scoreHistograms,
out pValueHistograms,
out qValueHistograms,
out piZeroLine);
return scoreHistograms;
}
protected EditPeakScoringModelDlg.HistogramGroup GetHistogramForScore(EditPeakScoringModelDlg editDlg, Type scoreType)
{
int index = GetIndex(editDlg, scoreType);
return GetHistogramForScoreIndex(editDlg, index);
}
private void VerifyCellValues(EditPeakScoringModelDlg editDlg, string expectedValueString, double sumWeights = 1.0, bool isRecording = true)
{
// Parse the expected values
var expectedFields = expectedValueString.Split(new[] { '|', ';' });
expectedFields = expectedFields.Take(expectedFields.Length - 1).ToArray();
Assert.AreEqual(expectedFields.Length % 3, 0);
int numRows = expectedFields.Length / 3;
// Verify expected number of rows.
Assert.AreEqual(editDlg.PeakCalculatorsGrid.RowCount, numRows);
// Verify normalized weights add to 1
double sumNormWeights = 0;
var readModeSb = new StringBuilder();
int fieldNum = 0;
string expectedValue = null;
for (int row = 0; row < numRows; row++)
{
for (int col = 0; col < 4; col++)
{
if(col != 1)
expectedValue = expectedFields[fieldNum++];
// Verify cell value.
var actualValue = editDlg.PeakCalculatorsGrid.GetCellValue(col, row);
if (IsRecordMode && isRecording)
{
if (col == 0)
{
readModeSb.Append(actualValue == null ? "" : actualValue + '|');
}
if (col == 2)
{
readModeSb.Append((string.IsNullOrEmpty(actualValue) ? "" : double.Parse(actualValue).ToString(editDlg.PeakCalculatorWeightFormat)) + '|');
}
if (col == 3)
{
readModeSb.Append((string.IsNullOrEmpty(actualValue) ? "" : double.Parse(actualValue).ToString(editDlg.PeakCalculatorPercentContributionFormat)) + ";");
}
}
if (col == 2 && !string.IsNullOrEmpty(actualValue))
actualValue = double.Parse(actualValue).ToString(editDlg.PeakCalculatorWeightFormat);
if (col == 3 && !string.IsNullOrEmpty(actualValue))
{
sumNormWeights += double.Parse(actualValue);
actualValue = double.Parse(actualValue).ToString(editDlg.PeakCalculatorPercentContributionFormat);
}
if(!IsRecordMode && col != 1)
{
// Normalize decimal separator
if (actualValue != null)
{
actualValue = actualValue.Replace(CultureInfo.CurrentCulture.NumberFormat.NumberDecimalSeparator,
CultureInfo.InvariantCulture.NumberFormat.NumberDecimalSeparator);
}
Assert.AreEqual(expectedValue, actualValue);
}
}
}
if(IsRecordMode && isRecording)
Console.WriteLine(@"""{0}"",", readModeSb);
Assert.AreEqual(sumNormWeights, sumWeights, 0.005);
}
private void VerifyBias(EditPeakScoringModelDlg editDlg, string bias, bool isRecording = true)
{
if (IsRecordMode)
{
if(isRecording)
Console.WriteLine(@"""{0}"",", editDlg.PeakScoringModel.Parameters.Bias.ToString(CultureInfo.CurrentCulture));
}
else
{
double biasNum;
Assert.IsTrue(double.TryParse(bias, NumberStyles.Float, CultureInfo.InvariantCulture, out biasNum));
Assert.AreEqual(editDlg.PeakScoringModel.Parameters.Bias, biasNum, 1e-5);
}
}
