private static void SaveRedundantSpectra(ISession sessionRedundant,
IEnumerable <SpectrumKeyTime> redundantSpectraIds,
IDictionary <string, long> dictFiles,
DbRefSpectra refSpectra,
Library library)
{
foreach (var specLiteKey in redundantSpectraIds)
{
if (specLiteKey.Key.RedundantId == 0)
{
continue;
}
// If this source file has already been saved, get its database Id.
// Otherwise, save it.
long spectrumSourceId = GetSpecturmSourceId(sessionRedundant, specLiteKey.FilePath, dictFiles);
// Get peaks for the redundant spectrum
var peaksInfo = library.LoadSpectrum(specLiteKey.Key);
var redundantSpectra = new DbRefSpectraRedundant
{
Id = specLiteKey.Key.RedundantId,
PeptideSeq = refSpectra.PeptideSeq,
PrecursorMZ = refSpectra.PrecursorMZ,
PrecursorCharge = refSpectra.PrecursorCharge,
PeptideModSeq = refSpectra.PeptideModSeq,
NumPeaks = (ushort)peaksInfo.Peaks.Count(),
Copies = refSpectra.Copies,
RetentionTime = specLiteKey.Time.RetentionTime,
IonMobilityValue = specLiteKey.Time.IonMobilityValue.GetValueOrDefault(),
IonMobilityType = specLiteKey.Time.IonMobilityType.GetValueOrDefault(),
IonMobilityHighEnergyDriftTimeOffsetMsec = specLiteKey.Time.IonMobilityHighEnergyDriftTimeOffsetMsec,
FileId = spectrumSourceId
};
var peaks = new DbRefSpectraRedundantPeaks
{
RefSpectra = redundantSpectra,
PeakIntensity = IntensitiesToBytes(peaksInfo.Peaks),
PeakMZ = MZsToBytes(peaksInfo.Peaks)
};
redundantSpectra.Peaks = peaks;
sessionRedundant.Save(redundantSpectra);
}
sessionRedundant.Flush();
sessionRedundant.Clear();
}
private static void SaveRedundantSpectra(ISession sessionRedundant,
IEnumerable<SpectrumKeyTime> redundantSpectraIds,
IDictionary<string, long> dictFiles,
DbRefSpectra refSpectra,
Library library)
{
foreach (var specLiteKey in redundantSpectraIds)
{
if (specLiteKey.Key.RedundantId == 0)
{
continue;
}
// If this source file has already been saved, get its database Id.
// Otherwise, save it.
long spectrumSourceId = GetSpecturmSourceId(sessionRedundant, specLiteKey.FilePath, dictFiles);
// Get peaks for the redundant spectrum
var peaksInfo = library.LoadSpectrum(specLiteKey.Key);
var redundantSpectra = new DbRefSpectraRedundant
{
Id = specLiteKey.Key.RedundantId,
PeptideSeq = refSpectra.PeptideSeq,
PrecursorMZ = refSpectra.PrecursorMZ,
PrecursorCharge = refSpectra.PrecursorCharge,
PeptideModSeq = refSpectra.PeptideModSeq,
NumPeaks = (ushort) peaksInfo.Peaks.Count(),
Copies = refSpectra.Copies,
RetentionTime = specLiteKey.Time.RetentionTime,
IonMobilityValue = specLiteKey.Time.IonMobilityValue.GetValueOrDefault(),
IonMobilityType = specLiteKey.Time.IonMobilityType.GetValueOrDefault(),
IonMobilityHighEnergyDriftTimeOffsetMsec = specLiteKey.Time.IonMobilityHighEnergyDriftTimeOffsetMsec,
FileId = spectrumSourceId
};
var peaks = new DbRefSpectraRedundantPeaks
{
RefSpectra = redundantSpectra,
PeakIntensity = IntensitiesToBytes(peaksInfo.Peaks),
PeakMZ = MZsToBytes(peaksInfo.Peaks)
};
redundantSpectra.Peaks = peaks;
sessionRedundant.Save(redundantSpectra);
}
sessionRedundant.Flush();
sessionRedundant.Clear();
}
