public override void ReadXml(XmlReader reader)
{
base.ReadXml(reader);
ControlAnnotation = reader.GetAttribute(ATTR.control_annotation);
ControlValue = reader.GetAttribute(ATTR.control_value);
CaseValue = reader.GetAttribute(ATTR.case_value);
IdentityAnnotation = reader.GetAttribute(ATTR.identity_annotation);
AverageTechnicalReplicates = reader.GetBoolAttribute(ATTR.avg_tech_replicates, true);
NormalizationMethod = NormalizationMethod.FromName(reader.GetAttribute(ATTR.normalization_method));
IncludeInteractionTransitions = reader.GetBoolAttribute(ATTR.include_interaction_transitions, false);
SummarizationMethod = SummarizationMethod.FromName(reader.GetAttribute(ATTR.summarization_method));
ConfidenceLevelTimes100 = reader.GetDoubleAttribute(ATTR.confidence_level, 95);
PerProtein = reader.GetBoolAttribute(ATTR.per_protein, false);
UseZeroForMissingPeaks = reader.GetBoolAttribute(ATTR.use_zero_for_missing_peaks, false);
QValueCutoff = reader.GetNullableDoubleAttribute(ATTR.q_value_cutoff);
var colorRows = new List <MatchRgbHexColor>();
reader.Read();
while (reader.IsStartElement(MatchRgbHexColor.XML_ROOT))
{
var row = new MatchRgbHexColor();
row.ReadXml(reader);
colorRows.Add(row);
}
if (colorRows.Any())
{
reader.Read();
}
ColorRows = ImmutableList <MatchRgbHexColor> .ValueOf(colorRows);
}
public override void ReadXml(XmlReader reader)
{
base.ReadXml(reader);
ControlAnnotation = reader.GetAttribute(ATTR.control_annotation);
ControlValue = reader.GetAttribute(ATTR.control_value);
CaseValue = reader.GetAttribute(ATTR.case_value);
IdentityAnnotation = reader.GetAttribute(ATTR.identity_annotation);
AverageTechnicalReplicates = reader.GetBoolAttribute(ATTR.avg_tech_replicates, true);
SumTransitions = reader.GetBoolAttribute(ATTR.sum_transitions, true);
NormalizationMethod = NormalizationMethod.FromName(reader.GetAttribute(ATTR.normalization_method));
IncludeInteractionTransitions = reader.GetBoolAttribute(ATTR.include_interaction_transitions, false);
SummarizationMethod = SummarizationMethod.FromName(reader.GetAttribute(ATTR.summarization_method));
ConfidenceLevelTimes100 = reader.GetDoubleAttribute(ATTR.confidence_level, 95);
PerProtein = reader.GetBoolAttribute(ATTR.per_protein, false);
reader.Read();
}
public override int GetHashCode()
{
unchecked
{
int hashCode = base.GetHashCode();
hashCode = (hashCode * 397) ^ (ControlAnnotation != null ? ControlAnnotation.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ (ControlValue != null ? ControlValue.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ (CaseValue != null ? CaseValue.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ (IdentityAnnotation != null ? IdentityAnnotation.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ AverageTechnicalReplicates.GetHashCode();
hashCode = (hashCode * 397) ^ SumTransitions.GetHashCode();
hashCode = (hashCode * 397) ^ NormalizationMethod.GetHashCode();
hashCode = (hashCode * 397) ^ IncludeInteractionTransitions.GetHashCode();
hashCode = (hashCode * 397) ^ SummarizationMethod.GetHashCode();
hashCode = (hashCode * 397) ^ ConfidenceLevel.GetHashCode();
hashCode = (hashCode * 397) ^ PerProtein.GetHashCode();
return(hashCode);
}
}
public override int GetHashCode()
{
unchecked
{
int hashCode = base.GetHashCode();
hashCode = (hashCode * 397) ^ (ControlAnnotation != null ? ControlAnnotation.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ (ControlValue != null ? ControlValue.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ (CaseValue != null ? CaseValue.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ (IdentityAnnotation != null ? IdentityAnnotation.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ AverageTechnicalReplicates.GetHashCode();
hashCode = (hashCode * 397) ^ (NormalizationMethod != null ? NormalizationMethod.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ IncludeInteractionTransitions.GetHashCode();
hashCode = (hashCode * 397) ^ (SummarizationMethod != null ? SummarizationMethod.GetHashCode() : 0);
hashCode = (hashCode * 397) ^ ConfidenceLevelTimes100.GetHashCode();
hashCode = (hashCode * 397) ^ PerProtein.GetHashCode();
hashCode = (hashCode * 397) ^ UseZeroForMissingPeaks.GetHashCode();
hashCode = (hashCode * 397) ^ QValueCutoff.GetHashCode();
hashCode = (hashCode * 397) ^ (ColorRows != null ? ColorRows.GetHashCode() : 0);
return(hashCode);
}
}
public GroupComparisonDef ChangeSummarizationMethod(SummarizationMethod summarizationMethod)
{
return(ChangeProp(ImClone(this), im => im.SummarizationMethod = summarizationMethod));
}
public GroupComparisonDef ChangeSummarizationMethod(SummarizationMethod summarizationMethod)
{
return ChangeProp(ImClone(this), im => im.SummarizationMethod = summarizationMethod);
}
