public UpdateList(ManageResultsDlg dlg, ListBox list)
{
_dlg = dlg;
_list = list;
_dlg.InListUpdate = true;
_list.BeginUpdate();
}
public UpdateList(ManageResultsDlg dlg, ListBox list)
{
_dlg = dlg;
_list = list;
_dlg.InListUpdate = true;
_list.BeginUpdate();
}
public void ManageResults()
{
var documentUI = DocumentUI;
if (!documentUI.Settings.HasResults && !documentUI.Settings.HasDocumentLibrary)
{
MessageDlg.Show(this, Resources.SkylineWindow_ManageResults_The_document_must_contain_mass_spec_data_to_manage_results_);
return;
}
using (ManageResultsDlg dlg = new ManageResultsDlg(this, _libraryManager))
{
if (dlg.ShowDialog(this) == DialogResult.OK)
{
// Remove from the cache chromatogram data to be reimported. This done before changing
// anything else to avoid making other changes to the results cause cache changes before
// the document is saved.
try
{
ReimportChromatograms(documentUI, dlg.ReimportChromatograms);
}
catch (Exception)
{
MessageDlg.Show(this, Resources.SkylineWindow_ManageResults_A_failure_occurred_attempting_to_reimport_results);
}
// And update the document to reflect real changes to the results structure
ModifyDocument(Resources.SkylineWindow_ManageResults_Manage_results, doc =>
{
if (dlg.IsRemoveAllLibraryRuns)
{
doc = doc.ChangeSettings(doc.Settings.ChangePeptideLibraries(lib =>
{
var libSpecs = new List<LibrarySpec>(lib.LibrarySpecs);
var libs = new List<Library>(lib.Libraries);
for (int i = 0; i < libSpecs.Count; i++)
{
if (libSpecs[i].IsDocumentLibrary)
{
libSpecs.RemoveAt(i);
libs.RemoveAt(i);
}
}
return lib.ChangeDocumentLibrary(false)
.ChangeLibraries(libSpecs.ToArray(), libs.ToArray());
}));
}
else if (dlg.LibraryRunsRemovedList.Count > 0)
{
BiblioSpecLiteLibrary docBlib;
if (DocumentUI.Settings.PeptideSettings.Libraries.TryGetDocumentLibrary(out docBlib))
{
try
{
docBlib.DeleteDataFiles(dlg.LibraryRunsRemovedList.ToArray(), this);
_libraryManager.ReloadLibrary(this, dlg.DocumentLibrarySpec);
}
catch (Exception x)
{
throw new IOException(TextUtil.LineSeparate(Resources.SkylineWindow_ManageResults_Failed_to_remove_library_runs_from_the_document_library_, x.Message));
}
}
}
var results = doc.Settings.MeasuredResults;
if (results == null)
return doc;
var listChrom = new List<ChromatogramSet>(dlg.Chromatograms);
if (ArrayUtil.ReferencesEqual(results.Chromatograms, listChrom))
return doc;
results = listChrom.Count > 0 ? results.ChangeChromatograms(listChrom.ToArray()) : null;
doc = doc.ChangeMeasuredResults(results);
doc.ValidateResults();
return doc;
});
// Modify document will have closed the streams by now. So, it is safe to delete the files.
if (dlg.IsRemoveAllLibraryRuns)
{
try
{
string docLibPath = BiblioSpecLiteSpec.GetLibraryFileName(DocumentFilePath);
FileEx.SafeDelete(docLibPath);
string redundantDocLibPath = BiblioSpecLiteSpec.GetRedundantName(docLibPath);
FileEx.SafeDelete(redundantDocLibPath);
string docLibCachePath = BiblioSpecLiteLibrary.GetLibraryCachePath(docLibPath);
FileEx.SafeDelete(docLibCachePath);
}
catch (FileEx.DeleteException deleteException)
{
MessageDlg.ShowException(this, deleteException);
}
}
}
}
}