private void update(object sender, RoutedEventArgs e)
{
pep1_flag = this.pep1_label_cbx.SelectedIndex;
pep2_flag = this.pep2_label_cbx.SelectedIndex;
PSM_Help_2 psm_help_2 = this.mainW.Dis_help.Psm_help as PSM_Help_2;
psm_help_2.Pep1 = new Peptide(this.pep1_sq_tbx.Text);
string mods_str = get_modification_str(0);
double pep_theory_mass = 0.0;
psm_help_2.Pep1.Tag_Flag = pep1_flag + 1;
psm_help_2.Pep1.Mods = Modification.get_modSites(psm_help_2.Pep1.Sq, mods_str, psm_help_2.Pep1.Tag_Flag, ref pep_theory_mass);
psm_help_2.Pep2 = new Peptide(this.pep2_sq_tbx.Text);
mods_str = get_modification_str(1);
psm_help_2.Pep2.Tag_Flag = pep2_flag + 1;
psm_help_2.Pep2.Mods = Modification.get_modSites(psm_help_2.Pep2.Sq, mods_str, psm_help_2.Pep2.Tag_Flag, ref pep_theory_mass);
ComboBoxItem item = this.link_cbx.SelectedItem as ComboBoxItem;
psm_help_2.Xlink_mass = (double)Config_Help.link_hash[item.Content as string];
int index1 = 0, index2 = 0;
if (!isLinkPosition_right(this.link_position_tbx.Text, ref index1, ref index2))
{
MessageBox.Show("xLink position has error!");
return;
}
psm_help_2.Link_pos1 = index1;
psm_help_2.Link_pos2 = index2;
PSM_Help_2.isNormal = (bool)this.normal_ckb.IsChecked;
PSM_Help_2.isInternal = (bool)this.internal_ckb.IsChecked;
this.mainW.Dis_help.Psm_help = psm_help_2;
MS2_Help ms2_help = new MS2_Help(this.mainW.Model2, this.mainW.Dis_help, Ladder_Help.Scale_Width, Ladder_Help.Scale_Height);
mainW.new_peptide = psm_help_2.Pep1;
ms2_help.window_sizeChg_Or_ZoomPan();
}
public Display_ms2_table(MainWindow main_win)
{
InitializeComponent();
this.main_win = main_win;
const int margin = 10;
if (main_win.Dis_help.Psm_help == null)
{
return;
}
List <string> sqs = new List <string>();
if (main_win.Dis_help.Psm_help is PSM_Help)
{
PSM_Help ph = main_win.Dis_help.Psm_help as PSM_Help;
if (main_win.Dis_help.Psm_help.Mix_Flag == 0)
{
sqs.Add(ph.Pep.Sq);
}
else
{
for (int i = 0; i < ph.Mix_peps.Count; ++i)
{
sqs.Add(ph.Mix_peps[i].Sq);
}
}
}
else if (main_win.Dis_help.Psm_help is pLink.PSM_Help_2)
{
pLink.PSM_Help_2 ph2 = main_win.Dis_help.Psm_help as pLink.PSM_Help_2;
sqs.Add(ph2.Pep1.Sq);
sqs.Add(ph2.Pep2.Sq);
}
else if (main_win.Dis_help.Psm_help is pLink.PSM_Help_3)
{
pLink.PSM_Help_3 ph3 = main_win.Dis_help.Psm_help as pLink.PSM_Help_3;
sqs.Add(ph3.Pep1.Sq);
sqs.Add(ph3.Pep2.Sq);
sqs.Add(ph3.Pep3.Sq);
}
for (int p = 0; p < main_win.Dis_help.Psm_help.Peptide_Number; ++p)
{
RowDefinition rd_pep = new RowDefinition();
rd_pep.Height = new GridLength();
this.psm_table.RowDefinitions.Add(rd_pep);
Grid grid = new Grid();
grid.ShowGridLines = true;
Grid.SetRow(grid, p);
this.psm_table.Children.Add(grid);
string sq = sqs[p];
List <PSM_Match> N_all_matches = main_win.Dis_help.Psm_help.Psm_detail.N_all_matches;
List <PSM_Match> C_all_matches = main_win.Dis_help.Psm_help.Psm_detail.C_all_matches;
for (int i = 0; i <= sq.Length; ++i)
{
ColumnDefinition cd = new ColumnDefinition();
grid.ColumnDefinitions.Add(cd);
}
RowDefinition rd0 = new RowDefinition();
rd0.Height = new GridLength();
grid.RowDefinitions.Add(rd0);
for (int i = 0; i < N_all_matches.Count; ++i)
{
if (N_all_matches[i].fragment_type != "")
{
RowDefinition rd = new RowDefinition();
rd.Height = new GridLength();
grid.RowDefinitions.Add(rd);
}
}
for (int i = 0; i < C_all_matches.Count; ++i)
{
if (C_all_matches[i].fragment_type != "")
{
RowDefinition rd = new RowDefinition();
rd.Height = new GridLength();
grid.RowDefinitions.Add(rd);
}
}
TextBlock tb0 = new TextBlock();
tb0.Text = "#";
tb0.HorizontalAlignment = HorizontalAlignment.Center;
tb0.Margin = new Thickness(margin);
Grid.SetColumn(tb0, 0);
Grid.SetRow(tb0, 0);
grid.Children.Add(tb0);
for (int i = 0; i < sq.Length; ++i)
{
TextBlock tb = new TextBlock();
if (i == 0)
{
tb.Text = sq[i] + "(1/*)";
}
else if (i == sq.Length - 1)
{
tb.Text = sq[i] + "(*/1)";
}
else
{
tb.Text = sq[i] + "(" + (i + 1) + "/" + (sq.Length - i) + ")";
}
tb.HorizontalAlignment = HorizontalAlignment.Center;
tb.Margin = new Thickness(margin);
Grid.SetColumn(tb, i + 1);
Grid.SetRow(tb, 0);
grid.Children.Add(tb);
}
int all_row = 0;
for (int i = 0; i < N_all_matches.Count; ++i)
{
if (N_all_matches[i].fragment_type != "")
{
++all_row;
TextBlock tb_type = new TextBlock();
tb_type.Text = N_all_matches[i].fragment_type;
tb_type.HorizontalAlignment = HorizontalAlignment.Center;
tb_type.Margin = new Thickness(margin);
Grid.SetRow(tb_type, all_row);
Grid.SetColumn(tb_type, 0);
grid.Children.Add(tb_type);
for (int j = 0; j < sq.Length; ++j)
{
TextBlock tb = new TextBlock();
if (j < sq.Length - 1)
{
tb.Text = N_all_matches[i].fragment_theory_mass[p][j]; //+ "," + N_all_matches[i].fragment_match_intensity[p][j]
if (N_all_matches[i].fragment_match_flag[p][j] == 1)
{
Color color = new Color();
if (tb_type.Text[0] == 'a')
{
color = Color.FromArgb(main_win.Dis_help.ddh.A_Match_Color.A, main_win.Dis_help.ddh.A_Match_Color.R,
main_win.Dis_help.ddh.A_Match_Color.G, main_win.Dis_help.ddh.A_Match_Color.B);
}
else if (tb_type.Text[0] == 'b')
{
color = Color.FromArgb(main_win.Dis_help.ddh.B_Match_Color.A, main_win.Dis_help.ddh.B_Match_Color.R,
main_win.Dis_help.ddh.B_Match_Color.G, main_win.Dis_help.ddh.B_Match_Color.B);
}
else if (tb_type.Text[0] == 'c')
{
color = Color.FromArgb(main_win.Dis_help.ddh.C_Match_Color.A, main_win.Dis_help.ddh.C_Match_Color.R,
main_win.Dis_help.ddh.C_Match_Color.G, main_win.Dis_help.ddh.C_Match_Color.B);
}
tb.Foreground = new SolidColorBrush(color);
tb.FontWeight = FontWeights.Bold;
}
}
else
{
tb.Text = "*";
}
tb.HorizontalAlignment = HorizontalAlignment.Center;
tb.Margin = new Thickness(margin);
Grid.SetRow(tb, all_row);
Grid.SetColumn(tb, j + 1);
grid.Children.Add(tb);
}
}
}
for (int i = 0; i < C_all_matches.Count; ++i)
{
if (C_all_matches[i].fragment_type != "")
{
++all_row;
TextBlock tb_type = new TextBlock();
tb_type.Text = C_all_matches[i].fragment_type;
tb_type.HorizontalAlignment = HorizontalAlignment.Center;
tb_type.Margin = new Thickness(margin);
Grid.SetRow(tb_type, all_row);
Grid.SetColumn(tb_type, 0);
grid.Children.Add(tb_type);
for (int j = 0; j < sq.Length; ++j)
{
TextBlock tb = new TextBlock();
if (j < sq.Length - 1)
{
tb.Text = C_all_matches[i].fragment_theory_mass[p][j]; // + "," + C_all_matches[i].fragment_match_intensity[p][j]
if (C_all_matches[i].fragment_match_flag[p][j] == 1)
{
Color color = new Color();
if (tb_type.Text[0] == 'x')
{
color = Color.FromArgb(main_win.Dis_help.ddh.X_Match_Color.A, main_win.Dis_help.ddh.X_Match_Color.R,
main_win.Dis_help.ddh.X_Match_Color.G, main_win.Dis_help.ddh.X_Match_Color.B);
}
else if (tb_type.Text[0] == 'y')
{
color = Color.FromArgb(main_win.Dis_help.ddh.Y_Match_Color.A, main_win.Dis_help.ddh.Y_Match_Color.R,
main_win.Dis_help.ddh.Y_Match_Color.G, main_win.Dis_help.ddh.Y_Match_Color.B);
}
else if (tb_type.Text[0] == 'z')
{
color = Color.FromArgb(main_win.Dis_help.ddh.Z_Match_Color.A, main_win.Dis_help.ddh.Z_Match_Color.R,
main_win.Dis_help.ddh.Z_Match_Color.G, main_win.Dis_help.ddh.Z_Match_Color.B);
}
else if (tb_type.Text[0] == '*') //中性丢失
{
color = Color.FromArgb(main_win.Dis_help.ddh.Lose_Match_Color.A, main_win.Dis_help.ddh.Lose_Match_Color.R,
main_win.Dis_help.ddh.Lose_Match_Color.G, main_win.Dis_help.ddh.Lose_Match_Color.B);
}
tb.Foreground = new SolidColorBrush(color);
tb.FontWeight = FontWeights.Bold;
}
}
else
{
tb.Text = "*";
}
tb.HorizontalAlignment = HorizontalAlignment.Center;
tb.Margin = new Thickness(margin);
Grid.SetRow(tb, all_row);
Grid.SetColumn(tb, sq.Length - j);
grid.Children.Add(tb);
}
}
}
}
}
