| public setModelQualifierType ( int type ) : int | ||
| type | int | |
| return | int | |
public void test_Validation_CVTerm1()
{
CVTerm cv = new CVTerm();
assertTrue( cv != null );
assertEquals( false, (cv.hasRequiredAttributes()) );
cv.setQualifierType(libsbml.MODEL_QUALIFIER);
assertEquals( false, (cv.hasRequiredAttributes()) );
cv.setModelQualifierType(libsbml.BQM_IS);
assertEquals( false, (cv.hasRequiredAttributes()) );
cv.addResource("ggg");
assertEquals( true, (cv.hasRequiredAttributes()) );
cv = null;
}
public void test_CVTerm_set_get()
{
CVTerm term = new CVTerm(libsbml.MODEL_QUALIFIER);
assertTrue( term != null );
assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER );
term.setModelQualifierType(libsbml.BQM_IS);
assertTrue( term != null );
assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER );
assertTrue( term.getModelQualifierType() == libsbml.BQM_IS );
term.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
term.setBiologicalQualifierType(libsbml.BQB_IS);
assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER );
assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_IS );
term = null;
}
public void test_CVTerm_setModelQualifierType()
{
CVTerm term = new CVTerm(libsbml.MODEL_QUALIFIER);
assertTrue( term != null );
assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER );
assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN );
assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN );
int i = term.setModelQualifierType(libsbml.BQM_IS);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER );
assertTrue( term.getModelQualifierType() == libsbml.BQM_IS );
assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN );
i = term.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER );
assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN );
assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN );
i = term.setModelQualifierType(libsbml.BQM_IS);
assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER );
assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN );
assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN );
term = null;
}
public void test_RDFAnnotation_testMissingMetaId()
{
SBMLDocument doc = new SBMLDocument ( 3,1 );
Model model = doc.createModel();
assertTrue( model != null );
model.setId("test1");
CVTerm term = new CVTerm ( libsbml.MODEL_QUALIFIER );
term.addResource("testResource");
term.setModelQualifierType(libsbml.BQM_IS);
model.setMetaId("t1");
model.addCVTerm(term);
model.setMetaId("");
string test = model.toSBML();
assertTrue( test == "<model id=\"test1\"/>" );
}
public void test_RDFAnnotation_parseCVTerms()
{
XMLNode node = RDFAnnotationParser.parseCVTerms(m.getCompartment(0));
assertTrue( node.getNumChildren() == 1 );
XMLNode rdf = node.getChild(0);
assertTrue(( "RDF" == rdf.getName() ));
assertTrue(( "rdf" == rdf.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() ));
assertTrue( rdf.getNumChildren() == 1 );
XMLNode desc = rdf.getChild(0);
assertTrue(( "Description" == desc.getName() ));
assertTrue(( "rdf" == desc.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() ));
assertTrue( desc.getNumChildren() == 1 );
XMLNode is1 = desc.getChild(0);
assertTrue(( "is" == is1.getName() ));
assertTrue(( "bqbiol" == is1.getPrefix() ));
assertTrue( is1.getNumChildren() == 1 );
XMLNode Bag = is1.getChild(0);
assertTrue(( "Bag" == Bag.getName() ));
assertTrue(( "rdf" == Bag.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() ));
assertTrue( Bag.getNumChildren() == 4 );
XMLNode li = Bag.getChild(0);
assertTrue(( "li" == li.getName() ));
assertTrue(( "rdf" == li.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() ));
assertTrue( li.getNumChildren() == 0 );
XMLNode li1 = Bag.getChild(1);
assertTrue(( "li" == li1.getName() ));
assertTrue(( "rdf" == li1.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() ));
assertTrue( li1.getNumChildren() == 0 );
XMLNode li2 = Bag.getChild(2);
assertTrue(( "li" == li2.getName() ));
assertTrue(( "rdf" == li2.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() ));
assertTrue( li2.getNumChildren() == 0 );
XMLNode li3 = Bag.getChild(3);
assertTrue(( "li" == li3.getName() ));
assertTrue(( "rdf" == li3.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() ));
assertTrue( li3.getNumChildren() == 0 );
node = null;
XMLNode node1 = RDFAnnotationParser.parseCVTerms(null);
assertTrue( node1 == null );
node1 = RDFAnnotationParser.createCVTerms(null);
assertTrue( node1 == null );
node1 = RDFAnnotationParser.parseCVTerms(m.getCompartment(2));
assertTrue( node1 == null );
node1 = RDFAnnotationParser.createCVTerms(m.getCompartment(2));
assertTrue( node1 == null );
node1 = RDFAnnotationParser.parseCVTerms(m);
assertTrue( node1 == null );
node1 = RDFAnnotationParser.createCVTerms(m);
assertTrue( node1 == null );
Compartment c = new Compartment(3,1);
c.setMetaId("_002");
node1 = RDFAnnotationParser.parseCVTerms(c);
assertTrue( node1 == null );
node1 = RDFAnnotationParser.createCVTerms(c);
assertTrue( node1 == null );
CVTerm cv = new CVTerm(libsbml.BIOLOGICAL_QUALIFIER);
cv.setBiologicalQualifierType(23);
cv.addResource("http://myres");
c.addCVTerm(cv);
node1 = RDFAnnotationParser.createCVTerms(c);
assertTrue( node1 == null );
c = null;
Model m1 = new Model(3,1);
m1.setMetaId("_002");
cv = new CVTerm(libsbml.MODEL_QUALIFIER);
cv.setModelQualifierType(23);
cv.addResource("http://myres");
m1.addCVTerm(cv);
node1 = RDFAnnotationParser.createCVTerms(m1);
assertTrue( node1 == null );
}
public void test_SBase_getQualifiersFromResources()
{
CVTerm cv = new CVTerm (libsbml.BIOLOGICAL_QUALIFIER);
cv.setBiologicalQualifierType (libsbml.BQB_ENCODES);
cv.addResource ("foo");
S.setMetaId ("sbase1");
S.addCVTerm (cv);
assertTrue (S.getResourceBiologicalQualifier ("foo") == libsbml.BQB_ENCODES);
CVTerm cv1 = new CVTerm (libsbml.MODEL_QUALIFIER);
cv1.setModelQualifierType (libsbml.BQM_IS);
cv1.addResource ("bar");
S.addCVTerm (cv1);
assertTrue (S.getResourceModelQualifier ("bar") == libsbml.BQM_IS);
cv = null;
cv1 = null;
}