public static void doIBDCSFast()
        {
            Program.addLog("data: " + data_files_folder);
            Program.addLog("ibd: " + out_folder);

            if (!Directory.Exists(data_files_folder) || !Directory.Exists(out_folder))
            {
                Program.addLog("Required data and ibd directories doesn't exist!");
                return;
            }

            string[] files = Directory.GetFiles(data_files_folder);
            int      total = files.Length;

            foreach (string file in files)
            {
                ExecTask task = new ExecTask(data_files_folder, out_folder, snp_threshold, base_pairs_threshold);
                task.processFile(file);
            }
        }
Exemplo n.º 2
0
        static void Main(string[] args)
        {
            //DEBUG
            //data_files_folder = @"D:\Genetics\Ancient-DNA\data\";
            //out_folder = @"D:\Genetics\Ancient-DNA\ibd\";


            Console.WriteLine("Genetic Genealogy Tools - Felix Chandrakumar <*****@*****.**>");
            Console.WriteLine();
            //Console.WriteLine("Syntax:");
            //Console.WriteLine("\tibdcsfast.exe <base_pairs_threshold> <snps_threshold>");
            //Console.WriteLine("\r\nE.g., ibdcsfast.exe 1000000 150");
            //Console.WriteLine("data and ibd folder must exist.");

            if (args.Length == 2)
            {
                base_pairs_threshold = int.Parse(args[0]);
                snp_threshold        = int.Parse(args[1]);
            }

            Console.WriteLine("data: " + data_files_folder);
            Console.WriteLine("ibd: " + out_folder);

            if (!Directory.Exists(data_files_folder) || !Directory.Exists(out_folder))
            {
                Console.WriteLine("Required data and ibd directories doesn't exist!");
                return;
            }

            string[] files = Directory.GetFiles(data_files_folder);
            int      total = files.Length;

            foreach (string file in files)
            {
                ExecTask task = new ExecTask(data_files_folder, out_folder, snp_threshold, base_pairs_threshold);
                task.processFile(file);
            }
        }