public virtual int[] align(List words, Range range)
{
if (range.upperEndpoint() - range.lowerEndpoint() < this.tupleSize || words.size() < this.tupleSize)
{
return(LongTextAligner.alignTextSimple(this.refWords.subList(range.lowerEndpoint(), range.upperEndpoint()), words, range.lowerEndpoint()));
}
int[] array = new int[words.size()];
Arrays.fill(array, -1);
int i = 0;
Iterator iterator = new LongTextAligner.Alignment(this, this.getTuples(words), range).getIndices().iterator();
while (iterator.hasNext())
{
LongTextAligner_Alignment_Node longTextAligner_Alignment_Node = (LongTextAligner_Alignment_Node)iterator.next();
for (i = Math.max(i, longTextAligner_Alignment_Node.getQueryIndex()); i < longTextAligner_Alignment_Node.getQueryIndex() + this.tupleSize; i++)
{
array[i] = longTextAligner_Alignment_Node.getDatabaseIndex() + i - longTextAligner_Alignment_Node.getQueryIndex();
}
}
return(array);
}
internal LongTextAligner_Alignment_1(LongTextAligner.Alignment alignment, LongTextAligner longTextAligner, Map map)
{
this_1 = alignment;
this.val_this_0 = longTextAligner;
this.val_cost = map;
}
internal static List access_200(LongTextAligner.Alignment alignment)
{
return(alignment.query);
}
internal static List access_100(LongTextAligner.Alignment alignment)
{
return(alignment.indices);
}
internal static List access_000(LongTextAligner.Alignment alignment)
{
return(alignment.shifts);
}
private LongTextAligner_Alignment_Node(LongTextAligner.Alignment alignment, int num, int num2)
{
this_1 = alignment;
this.databaseIndex = num2;
this.queryIndex = num;
}
internal LongTextAligner_Alignment_Node(LongTextAligner.Alignment alignment, int num, int num2, LongTextAligner_1 longTextAligner_) : this(alignment, num, num2)
{
}
