/// <summary>
/// Run through all the iterations
/// </summary>
/// <param name="numIterations"></param>
public void Run(int numIterations)
{
if (numIterations <= 0)
{
return;
}
// Do an initial run
Viterbi viterbi = new Viterbi(this.Observations);
viterbi.Run();
this.Iterations = new List <Viterbi>();
this.Iterations.Add(viterbi);
for (int i = 1; i < numIterations; i++)
{
// Set up the new iteration
viterbi = new Viterbi(this.Observations);
// Overwrite the default emissions and transitions
viterbi.Transitions = Iterations.Last().RetrainedTransitions;
viterbi.Emissions = Iterations.Last().RetrainedEmissions;
viterbi.Run();
this.Iterations.Add(viterbi);
}
}
private static void RunViterbi()
{
string genome = ReadGenome(@"data\GCF_000091665.1_ASM9166v1_genomic.fna");
Viterbi viterbi = new Viterbi(genome);
viterbi.Run();
string text = viterbi.Print();
Console.WriteLine(text);
File.WriteAllText("viterbi_results.txt", text);
Console.WriteLine("Press any key...");
Console.ReadKey();
}
