public static VennToolArguments ProcessCommandLineArguments(string[] args)
{
VennToolArguments parsedArgs = new VennToolArguments();
CommandLineArguments parser = new CommandLineArguments();
// Add parameters
parser.Parameter(ArgumentType.DefaultArgument, "regionArray", ArgumentValueType.MultipleInts, "",
"Values 3 or 7 values for regions in chart, [A B AB] or [A B C AB AC BC ABC]");
parser.Parameter(ArgumentType.Optional, "xl", ArgumentValueType.String, "", "XL OutputFile");
parser.Parameter(ArgumentType.Optional, "polar", ArgumentValueType.Bool, "", "Write result using polar coordinates");
parser.Parameter(ArgumentType.Optional, "presort", ArgumentValueType.Bool, "", "PreSort .BED files prior to processing");
parser.Parameter(ArgumentType.Optional, "Verbose", ArgumentValueType.Bool, "v", "Display Verbose output during processing");
parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "h", "Print the help information.");
try
{
parser.Parse(args, parsedArgs);
}
catch(ArgumentParserException ex)
{
Console.Error.WriteLine(ex.Message);
DisplayHelpScreen();
Environment.Exit(-1);
}
if (parsedArgs.Help)
{
DisplayHelpScreen();
Environment.Exit(-1);
}
/*
* Do any and all follow-up command line argument validation required
*/
if ((parsedArgs.regionArray == null)
|| ((parsedArgs.regionArray.Length != 3) && (parsedArgs.regionArray.Length != 7)))
{
Console.Error.WriteLine("\nProcessCommandLineArguments failed to find the expected number of arguments. [3 or 7]");
Environment.Exit(-1);
}
if (parsedArgs.Verbose)
{
Console.WriteLine(parsedArgs.Verbose);
Console.Write("RegionArray Size: {0}\n [", parsedArgs.regionArray.Length);
for (int i = 0; i < parsedArgs.regionArray.Length; ++i)
{
if (i == 0)
Console.Write(parsedArgs.regionArray[i]);
else
Console.Write(", {0}", parsedArgs.regionArray[i]);
}
Console.WriteLine("]");
}
return parsedArgs;
}
public static VennToolArguments ProcessCommandLineArguments(string[] args)
{
VennToolArguments parsedArgs = new VennToolArguments();
CommandLineArguments parser = new CommandLineArguments();
// Add parameters
parser.Parameter(ArgumentType.DefaultArgument, "regionArray", ArgumentValueType.MultipleInts, "",
"Values 3 or 7 values for regions in chart, [A B AB] or [A B C AB AC BC ABC]");
parser.Parameter(ArgumentType.Optional, "xl", ArgumentValueType.String, "", "XL OutputFile");
parser.Parameter(ArgumentType.Optional, "polar", ArgumentValueType.Bool, "", "Write result using polar coordinates");
parser.Parameter(ArgumentType.Optional, "presort", ArgumentValueType.Bool, "", "PreSort .BED files prior to processing");
parser.Parameter(ArgumentType.Optional, "verbose", ArgumentValueType.Bool, "", "Display Verbose output during processing");
try
{
parser.Parse(args, parsedArgs);
}
catch (ArgumentParserException ex)
{
Console.Error.WriteLine("\nProcessCommandLineArguments Failed to parse properly.");
Console.Error.WriteLine(ex.Message);
Environment.Exit(-1);
}
/*
* Do any and all follow-up command line argument validation required
*/
if ((parsedArgs.regionArray == null) ||
((parsedArgs.regionArray.Length != 3) && (parsedArgs.regionArray.Length != 7)))
{
Console.Error.WriteLine("\nProcessCommandLineArguments failed to find the expected number of arguments. [3 or 7]");
Environment.Exit(-1);
}
if (parsedArgs.verbose)
{
Console.WriteLine(parsedArgs.verbose);
Console.Write("RegionArray Size: {0}\n [", parsedArgs.regionArray.Length);
for (int i = 0; i < parsedArgs.regionArray.Length; ++i)
{
if (i == 0)
{
Console.Write(parsedArgs.regionArray[i]);
}
else
{
Console.Write(", {0}", parsedArgs.regionArray[i]);
}
}
Console.WriteLine("]");
}
return(parsedArgs);
}
public static VennToolArguments ProcessCommandLineArguments(string[] args)
{
VennToolArguments parsedArgs = new VennToolArguments();
if (!Parser.ParseArgumentsWithUsage(args, parsedArgs))
{
Console.Error.WriteLine("\nProcessCommandLineArguments Failed to parse properly.");
Environment.Exit(-1);
}
/*
* Do any and all follow-up command line argument validation required
*/
if ((parsedArgs.regionArray == null) ||
((parsedArgs.regionArray.Length != 3) && (parsedArgs.regionArray.Length != 7)))
{
Console.Error.WriteLine("\nProcessCommandLineArguments failed to find the expected number of arguments. [3 or 7]");
Environment.Exit(-1);
}
if (parsedArgs.verbose)
{
Console.WriteLine(parsedArgs.verbose);
Console.Write("RegionArray Size: {0}\n [", parsedArgs.regionArray.Length);
for (int i = 0; i < parsedArgs.regionArray.Length; ++i)
{
if (i == 0)
{
Console.Write(parsedArgs.regionArray[i]);
}
else
{
Console.Write(", {0}", parsedArgs.regionArray[i]);
}
}
Console.WriteLine("]");
}
return(parsedArgs);
}
public static void Main(string[] args)
{
Splash();
parsedArgs = ProcessCommandLineArguments(args);
VennDiagramData vdd = new VennDiagramData(parsedArgs.regionArray);
if (parsedArgs.polar)
{
vdd.WritePolarVennDiagramData();
}
else
{
vdd.WriteVennDiagramData();
}
if (parsedArgs.xl.Length > 0)
{
// produce an XL file with the 'right stuff'
// Make sure we pass a complete filename path too.
string filename = Path.GetFullPath(parsedArgs.xl);
Console.WriteLine("Produce Excel VennDiagram file: {0}", filename);
VennToNodeXL.CreateVennDiagramNodeXLFile(filename, vdd);
}
}
public static void Main(string[] args)
{
Splash();
arguments = ProcessCommandLineArguments(args);
VennDiagramData vdd = new VennDiagramData(arguments.regionArray);
if (arguments.polar)
{
vdd.WritePolarVennDiagramData();
}
else
{
vdd.WriteVennDiagramData();
}
if (arguments.xl.Length > 0)
{
// produce an XL file with the 'right stuff'
// Make sure we pass a complete filename path too.
string filename = Path.GetFullPath(arguments.xl);
Console.WriteLine("Produce Excel VennDiagram file: {0}", filename);
VennToNodeXL.CreateVennDiagramNodeXLFile(filename, vdd);
}
}
