/*
* private IEnumerable<TupleStruct<Kmer<Ty>, double>> ExtractUncharacteristicKmersForClass (int classIndex, MultisetKmer<Ty> thisClass, MultisetKmer<Ty> baseline)
* {
* //This will only work with an enormous amount of data for low k.
* }
*/
//Calculation:
//Synthesize features for an item.
//TODO: Enforce contract
public double[] SynthesizeFeatures(DiscreteEventSeries <Ty> item)
{
double[] vals = new double[kmerCount];
MultisetKmer <Ty> ms = item.ToMultisetVarKmer <Ty>(k);
foreach (KeyValuePair <Kmer <Ty>, int> kvp in ms)
{
int index = 0;
if (kmersOntoIndex.TryGetValue(kvp.Key, out index))
{
vals[index] = kvp.Value / (double)ms.Size((int)kvp.Key.Count);
}
}
return(vals);
}
/*
* private IEnumerable<TupleStruct<Kmer<Ty>, double>> ExtractUncharacteristicKmersForClass (int classIndex, MultisetKmer<Ty> thisClass, MultisetKmer<Ty> baseline)
* {
* //This will only work with an enormous amount of data for low k.
* }
*/
//Calculation:
//Synthesize features for an item.
//TODO: Enforce contract
public double[] SynthesizeFeatures(DiscreteEventSeries <Ty> item)
{
double[] vals = new double[classCount];
MultisetKmer <Ty> ms = item.ToMultisetVarKmer <Ty>(k);
foreach (KeyValuePair <Kmer <Ty>, int> kvp in ms)
{
Dictionary <int, double> classesWithKvp;
if (learnedCharacteristicKmers.TryGetValue(kvp.Key, out classesWithKvp))
{
//Console.WriteLine ("\tFound kmer " + kvp.Key + ".");
foreach (KeyValuePair <int, double> @class in classesWithKvp)
{
//Console.WriteLine ("\t\tClass " + @class.Key + ", Value " + @class.Value + ", Times " + kvp.Value);
vals[@class.Key] += kvp.Value * @class.Value;
}
}
}
return(vals);
}
