/// <summary>
/// Initialize SitesAdded array to proper size based on Part/L1Module/L2Module to accommodate all possible fusion sites.
/// Actual fusion site requirement checking done in Sites.xaml.cs during hit test
/// </summary>
/// @T.Feng
//private void initializeFusionSiteChecker()
//{
// switch (_moduleNum)
// {
// case 0: SitesAdded = new Sites[2]; break;//Part has 2 fusion sites
// case 1: SitesAdded = new Sites[5]; break;//L1Module has 5 fusion sites
// case 2: SitesAdded = new Sites[_l2Modulel1Count * 4 + 1]; break; //L2Module has L1ModuleNum*4 + 1 fusion sites
// default: Console.WriteLine("No fusion site-added storage constructed, no info on object that launched Primer Designer. PrimerDesigner2.xaml.cs Ln 250"); break;
// }
//}
#endregion
protected override void OnInitialized(EventArgs e)
{
base.OnInitialized(e);
DataContext = this;
_fusionSiteLibrary = new List <Sites>();
//_fusionSiteLibrary.Add(new Sites("Site A", "acaa", new SolidColorBrush(Colors.Gold)));
//_fusionSiteLibrary.Add(new Sites("Site B", "atgc", new SolidColorBrush(Colors.GreenYellow)));
//Sites tester = new Sites("Site C", "atgg", new SolidColorBrush(Colors.LimeGreen));
//_fusionSiteLibrary.Add(tester);
//_fusionSiteLibrary.Add(new Sites("Site D", "gtca", new SolidColorBrush(Colors.Orchid)));
//_fusionSiteLibrary.Add(new Sites("Site E", "cctg", new SolidColorBrush(Colors.PaleVioletRed)));
//_fusionSiteLibrary.Add(new Sites("Site F", "aatg", new SolidColorBrush(Colors.Peru)));
//_fusionSiteLibrary.Add(new Sites("Site G", "ggta", new SolidColorBrush(Colors.RosyBrown)));
//_fusionSiteLibrary.Add(new Sites("Site H", "catt", new SolidColorBrush(Colors.Thistle)));
//_fusionSiteLibrary.Add(new Sites("Site I", "gact", new SolidColorBrush(Colors.DeepSkyBlue)));
_fusionSiteLibrary.Add(new Sites("acaa"));
_fusionSiteLibrary.Add(new Sites("atgc"));
_fusionSiteLibrary.Add(new Sites("atgg"));
_fusionSiteLibrary.Add(new Sites("gtca"));
_fusionSiteLibrary.Add(new Sites("cctg"));
_fusionSiteLibrary.Add(new Sites("ggta"));
_fusionSiteLibrary.Add(new Sites("catt"));
_fusionSiteLibrary.Add(new Sites("gact"));
foreach (Sites s in _fusionSiteLibrary)
{
PD2_siteLibrary.Items.Add(s);
s.Center = SurfaceWindow1.SetPosition(s);
}
}
//Adds an L1Module template to Manual
public void addL1Module()
{
L1Module l1 = new L1Module();
l1.Template.Visibility = System.Windows.Visibility.Visible;
L1_manTab.Items.Add(l1);
l1.Center = SurfaceWindow1.SetPosition(l1);
l1.IsManipulationEnabled = false;
}
//Adds an editable fusion site template to the library
private void siteAdder_Click(object sender, RoutedEventArgs e)
{
Sites template = new Sites();
template.CircleText.IsReadOnly = false;
template.Height = 50;
template.Width = 50;
PD2_siteLibrary.Items.Add(template);
template.Center = SurfaceWindow1.SetPosition(template);
}
//Testing out global variable checking with addition of new Parts
private void partAdder_Click(object sender, RoutedEventArgs e)
{
Part part = new Part();
ImageSourceConverter icon = new ImageSourceConverter();
part.partName.Text = "BBa##)@)#";
part.partCategory.Text = "no filter";
L0_resultsSV.Items.Add(part);
part.Center = SurfaceWindow1.SetPosition(part);
}
//Stored separate from searchByFilter so it can be called by _progressBarWrapper as the long operation
//Returns a string to keep _progressBarWrapper happy
//private String searchByFilter_longOp(int filterIndex)
//{
// //Get list to populate from
// List<List<String>> sourceList;
// if (_partTypeSelected == "prom")
// {
// sourceList = promotersList;
// }
// else if (_partTypeSelected == "rbs")
// {
// sourceList = rbsList;
// }
// else if (_partTypeSelected == "cds")
// {
// sourceList = cdsList;
// }
// else //"term"
// {
// sourceList = terminatorsList;
// }
// //Find indexes to start and stop populating from in partsList[0]
// List<String> sourceIndexes = sourceList.ElementAt(0);
// int firstIndex = Convert.ToInt32(sourceIndexes.ElementAt(filterIndex));
// int lastIndex;
// //If filterIndex refers to the last index stored in sourceIndexes, i.e. the start of the last category
// if (filterIndex == sourceIndexes.Count - 1)
// { //lastIndex is the index of the last part stored in sourceList
// lastIndex = sourceList.Count - 1;
// }
// else
// { //Otherwise, lastIndex is the index of the last part before the start index of the next category
// lastIndex = Convert.ToInt32(sourceIndexes.ElementAt(filterIndex + 1)) - 1;
// }
// populate_Results(sourceList, firstIndex, lastIndex);
// return "I'm only here because threading wants a return type";
//}
//Populate L0_resultsSV with parts from partsList between given indexes
private void populate_Results(List <List <String> > partsList, int first, int last)
{
for (int i = first; i <= last; i++)
{
Part p = new Part();
p.Type = _partTypeSelected;
p.partName.Text = (partsList.ElementAt(i)).ElementAt(0);
p.partCategory.Text = (partsList.ElementAt(i)).ElementAt(1);
this.L0_resultsSV.Items.Add(p);
p.Center = SurfaceWindow1.SetPosition(p);
}
}
//Creates a new Part based on RegDataSheet and category; do not add duplicates
private void partFromRegDS(RegDataSheet regDS, String cat)
{
String currentPartsList = listCurrentPartsInResults();
if (!currentPartsList.Contains(regDS.Name))
{
Part p = new Part(convertType_RDSToMCP(regDS.Type));
p.myRegDS = regDS;
p.partName.Text = p.myRegDS.Name;
p.partCategory.Text = p.myRegDS.BasicInfo.DescriptionName;
L0_resultsSV.Items.Add(p);
p.Center = SurfaceWindow1.SetPosition(p);
}
}
//Places clone of dragged part into L1 if below threshold
private void PartInL0()
{
try
{
double yL1 = sw1.L1.Center.Y;
double yThreshold = yL1 - sw1.L1.Height / 2 - 180;
//Check if user is dropping or dumping
if (Center.Y > yThreshold)
{ //Create clone, check Part type, and place in appropriate L1 partsbox
Part L1clone = clone();
if (_type == "prom")
{
sw1.L1.L1_prom.Items.Add(L1clone);
}
else if (_type == "rbs")
{
sw1.L1.L1_rbs.Items.Add(L1clone);
}
else if (_type == "cds")
{
sw1.L1.L1_cds.Items.Add(L1clone);
}
else if (_type == "term")
{
sw1.L1.L1_term.Items.Add(L1clone);
}
L1clone.Center = SurfaceWindow1.SetPosition(L1clone);
Console.WriteLine("Part was added to L1");
}
else
{
myClone.IsManipulationEnabled = true;
myClone.Opacity = 1;
}
}
catch (Exception exc) { Console.WriteLine("PartInL0 \n" + exc); }
}
//L1 behavior handler: drops L1Modules into L2
//Checks center against threshold value, below which drop occurs
//Currently handles Permutations functions of Level 2 (consider moving to L1ModuleInL2())
private void L1ModuleInL1()
{
ScatterView parent = Parent as ScatterView;
//Places item in L2 if user wants to drop it in
double yL1 = sw1.L1.Center.Y;
double yL2 = sw1.L2.Center.Y;
double yThreshold = yL2 - yL1 - 100; //For a 50 margin and 50 more because the center is relative to L1_SV
//Check if user is dropping or dumping
Point transformedCenter = SurfaceWindow1.transformCoords(this, sw1.L1.L1_SV);
if (transformedCenter.Y > yThreshold) //0 is the top relative to L1_xTabs; adjust accordingly. Need to fix this to a relative height.
{
L1Module cloneToL2 = clone();
sw1.L2.L2_L1ModulesSV.Items.Add(cloneToL2);
cloneToL2.Center = SurfaceWindow1.SetPosition(cloneToL2);
}
else
{ //Dumped; restore function to clone
myClone.IsManipulationEnabled = true;
myClone.Opacity = 1;
}
}
//Reads in Part Registry ID and type from text file
private void populate_ResultsPage(string FilePath)
{
StreamReader reader = new StreamReader(FilePath);
while (reader.EndOfStream != true)
{
//Read in data
string ThisLine = reader.ReadLine();
string[] SplitLine = ThisLine.Split(',');
string CategorySplit = SplitLine[1].Trim();
string CommonNameSplit = (SplitLine[2].Trim()).Replace("&", "");
//Filter data, add Parts
if (CategorySplit == filterText)
{
Part p = new Part();
p.Type = _partTypeSelected;
p.partName.Text = SplitLine[0];
p.partCategory.Text = CommonNameSplit;
this.L0_resultsSV.Items.Add(p);
p.Center = SurfaceWindow1.SetPosition(p);
}
}
}
//Generates permutations of L1 modules using selected Parts
private void permMaker_Click(object sender, RoutedEventArgs e)
{
permMaker.IsEnabled = false;
List <Part> selectedPromList = new List <Part>();
List <Part> selectedRBSList = new List <Part>();
List <Part> selectedCDSList = new List <Part>();
List <Part> selectedTermList = new List <Part>();
//if the background is a different color than the border, then part is selected and should be added to selected part list
foreach (Part p in sw1.L1.L1_prom.Items)
{
if (p.BorderBrush == selected)
{
selectedPromList.Add(p);
}
}
foreach (Part r in sw1.L1.L1_rbs.Items)
{
if (r.BorderBrush == selected)
{
selectedRBSList.Add(r);
}
}
foreach (Part c in sw1.L1.L1_cds.Items)
{
if (c.BorderBrush == selected)
{
selectedCDSList.Add(c);
}
}
foreach (Part t in sw1.L1.L1_term.Items)
{
if (t.BorderBrush == selected)
{
selectedTermList.Add(t);
}
}
if (selectedPromList.Count != 0 && selectedRBSList.Count != 0 && selectedCDSList.Count != 0 && selectedTermList.Count != 0)
{
//permutations are cleared and regenerated everytime
sw1.L1.L1_permTab.Items.Clear();
foreach (Part p in selectedPromList)
{
foreach (Part r in selectedRBSList)
{
foreach (Part c in selectedCDSList)
{
foreach (Part t in selectedTermList)
{
//L1Module L = new L1Module(p, r, c, t);//////////////////////////////////////////////////
L1Module L = new L1Module();
L.L1Prom.copyPartInfoFrom(p);
L.L1RBS.copyPartInfoFrom(r);
L.L1CDS.copyPartInfoFrom(c);
L.L1Term.copyPartInfoFrom(t);
sw1.L1.L1_permTab.Items.Add(L);
L.Center = SurfaceWindow1.SetPosition(L);
//generate Level1 modules and then add to the list called Level1module List.
}
}
}
}
}
permMaker.IsEnabled = true;
}