public void ClusterNoDataObjects()
{
var nj = new NeighborJoiningClusterer <char>((o1, o2) => 0);
IUndirectedGraph <Cluster <char>, ClusterEdge <char> > tree = nj.GenerateClusters(Enumerable.Empty <char>());
Assert.That(tree.IsEdgesEmpty);
}
public void Cluster()
{
var matrix = new double[, ]
{
{ 0, 1, 2, 3, 3 },
{ 1, 0, 2, 3, 3 },
{ 2, 2, 0, 3, 3 },
{ 3, 3, 3, 0, 1 },
{ 3, 3, 3, 1, 0 }
};
var nj = new NeighborJoiningClusterer <char>((o1, o2) => matrix[o1 - 'A', o2 - 'A']);
IUndirectedGraph <Cluster <char>, ClusterEdge <char> > tree = nj.GenerateClusters(new[] { 'A', 'B', 'C', 'D', 'E' });
var vertices = new Dictionary <string, Cluster <char> >
{
{ "root", new Cluster <char> {
Description = "root"
} },
{ "A", new Cluster <char>('A')
{
Description = "A"
} },
{ "B", new Cluster <char>('B')
{
Description = "B"
} },
{ "C", new Cluster <char>('C')
{
Description = "C"
} },
{ "D", new Cluster <char>('D')
{
Description = "D"
} },
{ "E", new Cluster <char>('E')
{
Description = "E"
} },
{ "DE", new Cluster <char> {
Description = "DE"
} },
{ "AB", new Cluster <char> {
Description = "AB"
} }
};
var edges = new[]
{
new ClusterEdge <char>(vertices["root"], vertices["C"], 1.0),
new ClusterEdge <char>(vertices["root"], vertices["DE"], 1.5),
new ClusterEdge <char>(vertices["root"], vertices["AB"], 0.5),
new ClusterEdge <char>(vertices["DE"], vertices["D"], 0.5),
new ClusterEdge <char>(vertices["DE"], vertices["E"], 0.5),
new ClusterEdge <char>(vertices["AB"], vertices["A"], 0.5),
new ClusterEdge <char>(vertices["AB"], vertices["B"], 0.5)
};
AssertTreeEqual(tree, edges.ToUndirectedGraph <Cluster <char>, ClusterEdge <char> >(false));
}
public void ClusterOneDataObject()
{
var nj = new NeighborJoiningClusterer <char>((o1, o2) => 0);
IUndirectedGraph <Cluster <char>, ClusterEdge <char> > tree = nj.GenerateClusters(new[] { 'A' });
Assert.That(tree.VertexCount, Is.EqualTo(1));
Assert.That(tree.IsEdgesEmpty);
}
public void ClusterTwoDataObjects()
{
var nj = new NeighborJoiningClusterer <char>((o1, o2) => 1);
IUndirectedGraph <Cluster <char>, ClusterEdge <char> > tree = nj.GenerateClusters(new[] { 'A', 'B' });
var edges = new[]
{
new ClusterEdge <char>(new Cluster <char>('A'), new Cluster <char>('B'), 1.0)
};
AssertTreeEqual(tree, edges.ToUndirectedGraph <Cluster <char>, ClusterEdge <char> >());
}
