public void Run()
{
// fire up R
STATCONNECTORSRVLib.StatConnector statConn = new StatConnector();
statConn.Init("R");
// read the custom functions from the dir
RFunctions rfunc = new RFunctions(_customFunctionsDir, statConn);
rfunc.Reload();
// for each set of assay results, associate the results with the substructure libraries
foreach (AssayResults aResults in _hsAssayResults.Values)
{
// associate the stats collection with the results
aResults.StatCollection = _stats.Copy();
// associate the results with the substructure library
_substructureLibrary.AddResults(aResults);
// now, calculate the statistics for this result set (which will also calculate statistics for
// all results sets that were added to the substructure library entries).
aResults.CalculateStatistics(statConn);
}
// close the connection
statConn.Close();
}
/// <summary>
/// prepare to perform the analysis
/// </summary>
public void PrepAnalysisInteractive()
{
CheckREnvironment();
// clear out the library
_subsLib.FilteredLibrary.ClearResults();
// read the custom functions from the dir
_rfunc = new RFunctions(_functionsDir, _statConn);
_rfunc.Reload();
// get the size of this run so we can update interested parties
_analysisSize = _subsLib.FilteredLibrary.NumEntries * _hsAssayResults.Count;
_analysisCount = 0;
_enum = _hsAssayResults.GetEnumerator();
// Enumerators start out _before_ the beginning of the collection, so we have to
// MoveNext to be at the first value
_enum.MoveNext();
_currResults = ((AssayResults)_enum.Value).FilteredResults;
// associate the stats collection with the results
_currResults.StatCollection = _stats.Copy();
// clear subresults
_currResults.ClearSubResults();
// associate the results with the substructure library
_subsLib.FilteredLibrary.AddResults(_currResults);
// prep the statistics run
_currResults.PrepInteractiveStatisticsRun(_statConn);
}
/// <summary>
/// Non-interactive, one-shot method of running analysis
/// </summary>
public void RunAnalysis()
{
// read the custom functions from the dir
_rfunc = new RFunctions(_functionsDir, _statConn);
_rfunc.Reload();
// for each set of assay results, associate the results with the substructure libraries
foreach (AssayResults aResults in _hsAssayResults.Values)
{
// associate the stats collection with the results
aResults.FilteredResults.StatCollection = _stats.Copy();
// associate the results with the substructure library
_subsLib.FilteredLibrary.AddResults(aResults.FilteredResults);
// now, calculate the statistics for this result set (which will also calculate statistics for
// all results sets that were added to the substructure library entries).
aResults.FilteredResults.CalculateStatistics(_statConn);
}
// close the connection
_statConn.Close();
}