/// <summary>
/// For longer sequence variations, where a range of sequence is replaced. Point mutations should be specified with the same begin and end positions.
/// </summary>
/// <param name="oneBasedBeginPosition"></param>
/// <param name="oneBasedEndPosition"></param>
/// <param name="originalSequence"></param>
/// <param name="variantSequence"></param>
/// <param name="oneBasedModifications"></param>
public SequenceVariation(int oneBasedBeginPosition, int oneBasedEndPosition, string originalSequence, string variantSequence, string description, Dictionary <int, List <Modification> > oneBasedModifications = null)
{
OneBasedBeginPosition = oneBasedBeginPosition;
OneBasedEndPosition = oneBasedEndPosition;
OriginalSequence = originalSequence ?? "";
VariantSequence = variantSequence ?? "";
Description = new SequenceVariantDescription(description);
OneBasedModifications = oneBasedModifications ?? new Dictionary <int, List <Modification> >();
}
public override bool Equals(object obj)
{
SequenceVariantDescription s = obj as SequenceVariantDescription;
return(s != null && s.Description == Description);
}
