public MainViewModel(User user, Patient patient, string scriptVersion, ObservableCollection <PlanningItemViewModel> planningItemList, PlanningItemViewModel planningItem)
{
ActivePlanningItem = planningItem;
Patient = patient;
Image = ActivePlanningItem.PlanningItemImage;
StructureSet = ActivePlanningItem.PlanningItemStructureSet;
DirectoryInfo constraintDir = new DirectoryInfo(Path.Combine(AssemblyHelper.GetAssemblyDirectory(), "ConstraintTemplates"));
//DirectoryInfo constraintDir = new DirectoryInfo(Path.Combine(AssemblyHelper.GetAssemblyDirectory(), "ConstraintTemplates"));
string firstFileName = constraintDir.GetFiles().FirstOrDefault().ToString();
string firstConstraintFilePath = Path.Combine(constraintDir.ToString(), firstFileName);
ActiveConstraintPath = new ConstraintViewModel(firstConstraintFilePath);
PlanningItemList = planningItemList;
StructureList = StructureSetListViewModel.GetStructureList(StructureSet);;
ConstraintComboBoxList = ConstraintListViewModel.GetConstraintList(constraintDir.ToString());
//GetPQMSummaries(ActiveConstraintPath, ActivePlanningItem, Patient);
//PqmSummaries = new ObservableCollection<PQMSummaryViewModel>();
ErrorGrid = GetErrors(ActivePlanningItem);
Title = GetTitle(patient, scriptVersion);
ModelGroup = new Model3DGroup();
SliderValue = 0;
upDir = new Vector3D(0, -1, 0);
lookDir = new Vector3D(0, 0, 1);
isoctr = new Point3D(0, 0, 0); //just to initalize
cameraPosition = new Point3D(0, 0, -3500);
PlanningItemSummaries = GetPlanningItemSummary(ActivePlanningItem, PlanningItemList);
//NotifyPropertyChanged("Structure");
}
public PQMSummaryViewModel[] GetObjectives(ConstraintViewModel constraintVM)
{
PQMSummaryViewModel[] m_objectives;
string WORKBOOK_TEMPLATE_DIR = System.Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments);
string WORKBOOK_RESULT_DIR = System.IO.Path.GetTempPath();
List <string[]> CSVSheet = new List <string[]>();
string[] header;
string constraintPath = constraintVM.ConstraintPath;
// make sure the workbook template exists
if (!System.IO.File.Exists(constraintPath))
{
System.Windows.MessageBox.Show(string.Format("The template file '{0}' chosen does not exist.", constraintPath));
//return;
}
CSVSheet = parseCSV(constraintPath);
//extract header and modify to indicate output values
header = CSVSheet.First();
header[2] = "Patient Structure";
CSVSheet.RemoveAt(0);
int numFoundObjectives = ReadObjectives(CSVSheet, out m_objectives);
Console.WriteLine("File " + constraintPath + " loaded. Objective number is " + numFoundObjectives);
return(m_objectives);
}
public static ObservableCollection <ConstraintViewModel> GetConstraintList(string constraintDir)
{
var ConstraintComboBoxList = new ObservableCollection <ConstraintViewModel>();
foreach (string file in Directory.EnumerateFiles(constraintDir, "*.csv"))
{
var constraintViewModel = new ConstraintViewModel(file);
ConstraintComboBoxList.Add(constraintViewModel);
}
return(ConstraintComboBoxList);
}
public ObservableCollection <Structure> FindMatchingStructures(ConstraintViewModel constraintVM, StructureSet structureSet)
{
PQMSummaryViewModel[] m_objectives = GetObjectives(constraintVM);
var evalStructureList = new ObservableCollection <Structure>();
//int i = 0;
foreach (var objective in m_objectives)
{
Structure evalStructure = FindStructureFromAlias(structureSet, objective.TemplateId, objective.TemplateAliases, objective.TemplateCodes);
evalStructureList.Add(evalStructure);
//i++;
}
return(evalStructureList);
}
public static PQMViewModel[] GetObjectives(ConstraintViewModel constraint)
{
List <string[]> CSVSheet = new List <string[]>();
CSVSheet = parseCSV(constraint.ConstraintPath);
//extract header and modify to indicate output values
PQMViewModel[] objectives = new PQMViewModel[CSVSheet.Count()];
int i = 0;
foreach (string[] line in CSVSheet)
{
if (line[0] == "") //A blank line is present
{
continue;
}
if (line[0] == "Structure IDs")
{
continue;
}
objectives[i] = new PQMViewModel();
// Structure ID
objectives[i].TemplateId = line[0];
// Structure Code
string codes = line[1];
objectives[i].TemplateCodes = (codes.Length > 0) ? ReplaceWhitespace(codes, @"\s+").Split('|') : new string[] { objectives[i].TemplateId };
// Aliases : extract individual aliases using "|" as separator. Ignore whitespaces. If blank, use the ID.
string aliases = line[2];
objectives[i].TemplateAliases = (aliases.Length > 0) ? aliases.Split('|') : new string[] { objectives[i].TemplateId };
// DVH Objective
objectives[i].DVHObjective = line[4];
// Evaluator
objectives[i].Goal = line[5];
objectives[i].Variation = line[6];
objectives[i].Priority = line[7];
objectives[i].Achieved = ""; //find this later
objectives[i].Met = ""; //find this later
i++;
}
return(objectives);
}
public Task <PQMViewModel[]> GetObjectivesAsync(ConstraintViewModel constraint) =>
RunAsync(context =>
{
var objectives = Objectives.GetObjectives(constraint);
return(objectives.ToArray() ?? new PQMViewModel[0]);
});
public ObservableCollection <PQMSummaryViewModel> AddPQMSummary(ObservableCollection <PQMSummaryViewModel> PqmSummaries, ConstraintViewModel constraintPath, PlanningItemViewModel planningItem, Patient patient)
{
StructureSet structureSet = planningItem.PlanningItemStructureSet;
Structure evalStructure;
//ObservableCollection<PQMSummaryViewModel> pqmSummaries = new ObservableCollection<PQMSummaryViewModel>();
//ObservableCollection<StructureViewModel> foundStructureList = new ObservableCollection<StructureViewModel>();
var calculator = new PQMSummaryCalculator();
//var numCol = PqmSummaries[0]
//Objectives = calculator.GetObjectives(constraintPath);
if (planningItem.PlanningItemObject is PlanSum)
{
var waitWindowPQM = new WaitWindowPQM();
PlanSum plansum = (PlanSum)planningItem.PlanningItemObject;
if (plansum.IsDoseValid() == true)
{
waitWindowPQM.Show();
foreach (PQMSummaryViewModel pqm in PqmSummaries)
{
evalStructure = calculator.FindStructureFromAlias(structureSet, pqm.TemplateId, pqm.TemplateAliases, pqm.TemplateCodes);
if (evalStructure != null)
{
var pqmSummary = calculator.GetObjectiveProperties(pqm, planningItem, structureSet, new StructureViewModel(evalStructure));
pqm.Achieved_Comparison = pqmSummary.Achieved;
pqm.AchievedColor_Comparison = pqmSummary.AchievedColor;
pqm.AchievedPercentageOfGoal_Comparison = pqmSummary.AchievedPercentageOfGoal;
pqm.Met_Comparison = pqmSummary.Met;
//pqmSummaries.Add(pqmSummary);
//foundStructureList.Add(new StructureViewModel(evalStructure));
}
}
//FoundStructureList = foundStructureList;
waitWindowPQM.Close();
}
//PqmSummaries = pqmSummaries;
}
else //is plansetup
{
var waitWindowPQM = new WaitWindowPQM();
PlanSetup planSetup = (PlanSetup)planningItem.PlanningItemObject;
if (planSetup.IsDoseValid() == true)
{
waitWindowPQM.Show();
foreach (PQMSummaryViewModel pqm in PqmSummaries)
{
evalStructure = calculator.FindStructureFromAlias(structureSet, pqm.TemplateId, pqm.TemplateAliases, pqm.TemplateCodes);
if (evalStructure != null)
{
if (evalStructure.Id.Contains("PTV") == true)
{
foreach (Structure s in structureSet.Structures)
{
if (s.Id == planSetup.TargetVolumeID)
{
evalStructure = s;
}
}
}
var pqmSummary = calculator.GetObjectiveProperties(pqm, planningItem, structureSet, new StructureViewModel(evalStructure));
pqm.Achieved_Comparison = pqmSummary.Achieved;
//foundStructureList.Add(new StructureViewModel(evalStructure));
}
}
//FoundStructureList = foundStructureList;
waitWindowPQM.Close();
}
//PqmSummaries = pqmSummaries;
}
return(PqmSummaries);
}
public void GetPQMSummaries(ConstraintViewModel constraintPath, PlanningItemViewModel planningItem, Patient patient)
{
PqmSummaries = new ObservableCollection <PQMSummaryViewModel>();
StructureSet structureSet = planningItem.PlanningItemStructureSet;
Structure evalStructure;
ObservableCollection <PQMSummaryViewModel> pqmSummaries = new ObservableCollection <PQMSummaryViewModel>();
ObservableCollection <StructureViewModel> foundStructureList = new ObservableCollection <StructureViewModel>();
var calculator = new PQMSummaryCalculator();
Objectives = calculator.GetObjectives(constraintPath);
if (planningItem.PlanningItemObject is PlanSum)
{
var waitWindowPQM = new WaitWindowPQM();
PlanSum plansum = (PlanSum)planningItem.PlanningItemObject;
if (plansum.IsDoseValid() == true)
{
waitWindowPQM.Show();
foreach (PQMSummaryViewModel objective in Objectives)
{
evalStructure = calculator.FindStructureFromAlias(structureSet, objective.TemplateId, objective.TemplateAliases, objective.TemplateCodes);
if (evalStructure != null)
{
var evalStructureVM = new StructureViewModel(evalStructure);
var obj = calculator.GetObjectiveProperties(objective, planningItem, structureSet, evalStructureVM);
PqmSummaries.Add(obj);
NotifyPropertyChanged("Structure");
}
}
waitWindowPQM.Close();
}
}
if (planningItem.PlanningItemObject is PlanSetup) //is plansetup
{
var waitWindowPQM = new WaitWindowPQM();
PlanSetup planSetup = (PlanSetup)planningItem.PlanningItemObject;
if (planSetup.IsDoseValid() == true)
{
waitWindowPQM.Show();
foreach (PQMSummaryViewModel objective in Objectives)
{
evalStructure = calculator.FindStructureFromAlias(structureSet, objective.TemplateId, objective.TemplateAliases, objective.TemplateCodes);
if (evalStructure != null)
{
if (evalStructure.Id.Contains("PTV") == true)
{
foreach (Structure s in structureSet.Structures)
{
if (s.Id == planSetup.TargetVolumeID)
{
evalStructure = s;
}
}
}
var evalStructureVM = new StructureViewModel(evalStructure);
var obj = calculator.GetObjectiveProperties(objective, planningItem, structureSet, evalStructureVM);
PqmSummaries.Add(obj);
NotifyPropertyChanged("Structure");
}
}
waitWindowPQM.Close();
}
}
}