public Genotype CombineGenotypes(Genotype other, GenotypeRepository genotypeRepository, IRandomNumberGenerator RNG) //########FIX THIS#########
{
var choice = RNG.Next(0, 4);
var g = new Genotype();
g.AlleleName = AlleleName;
if (choice == 0)
{
g.Allele1 = this.Allele1;
g.Allele2 = other.Allele1;
}
if (choice == 1)
{
g.Allele1 = this.Allele2;
g.Allele2 = other.Allele1;
}
if (choice == 2)
{
g.Allele1 = this.Allele1;
g.Allele2 = other.Allele2;
}
if (choice == 3)
{
g.Allele1 = this.Allele2;
g.Allele2 = other.Allele2;
}
return(g);
}
public Genotype MostLikelyGenotype(Genotype other, GenotypeRepository genotypeRepository, IRandomNumberGenerator RNG)
{
string letter = AlleleName;
List <Genotype> GenericGenotypes = CreateGenericGenotypes();
Genotype hetG = GenericGenotypes[0];
Genotype domG = GenericGenotypes[1];
Genotype recG = GenericGenotypes[2];
Genotype hetG2 = GenericGenotypes[3];
int hetGTally = 0;
int domGTally = 0;
int recGTally = 0;
int hetG2Tally = 0;
for (int i = 0; i < 100; i++)
{
Genotype g = CombineGenotypes(other, genotypeRepository, RNG);
if (g.ToString() == hetG.ToString())
{
hetGTally++;
}
if (g.ToString() == domG.ToString())
{
domGTally++;
}
if (g.ToString() == recG.ToString())
{
recGTally++;
}
if (g.ToString() == hetG2.ToString())
{
hetG2Tally++;
}
}
if (domGTally > recGTally || domGTally > hetGTally || hetGTally > hetG2Tally)
{
return(domG);
}
if (recGTally > domGTally || recGTally > domGTally || hetGTally > hetG2Tally)
{
return(recG);
}
if (hetGTally > domGTally || hetGTally > recGTally || hetGTally > hetG2Tally)
{
return(hetG);
}
if (hetG2Tally > domGTally || hetG2Tally > recGTally || hetG2Tally > hetGTally)
{
return(hetG);// aA is not correct biological term= is always dominant followed by reccessive so returns hetG or Aa
}
{
return(other);
}
}
public void GenerateGenotypesForATrait(GenotypeRepository genotypeRepository)
{
genotypeRepository.AddGenotype(AlleleName, Dominance.Dominant, Dominance.Recessive);
genotypeRepository.AddGenotype(AlleleName, Dominance.Recessive, Dominance.Recessive);
genotypeRepository.AddGenotype(AlleleName, Dominance.Dominant, Dominance.Dominant);
}
public List <Genotype> CalculateParentalGenotypes(GenotypeRepository genotypeRepository, IRandomNumberGenerator RNG)
{
List <Genotype> PossibleParentalGenotypes = new List <Genotype>();
string letter = AlleleName;
List <Genotype> GenericGenotypes = CreateGenericGenotypes();
Genotype hetG = GenericGenotypes[0];
Genotype domG = GenericGenotypes[1];
Genotype recG = GenericGenotypes[2];
Genotype hetG2 = GenericGenotypes[3];
Genotype resultOfHetGAndDomG = hetG.CombineGenotypes(domG, genotypeRepository, RNG);
Genotype resultOfHetGAndRecG = hetG.CombineGenotypes(recG, genotypeRepository, RNG);
Genotype resultOfHetGAndHetG = hetG.CombineGenotypes(hetG, genotypeRepository, RNG);
Genotype resultOfDomGAndDomG = domG.CombineGenotypes(domG, genotypeRepository, RNG);
Genotype resultOfDomGAndRecG = domG.CombineGenotypes(recG, genotypeRepository, RNG);
Genotype resultOfRecGAndRecG = recG.CombineGenotypes(recG, genotypeRepository, RNG);
Genotype resultOfhetG2AndRecG = hetG2.CombineGenotypes(recG, genotypeRepository, RNG);
Genotype resultOfhetG2AndDomG = hetG2.CombineGenotypes(domG, genotypeRepository, RNG);
Genotype resultOfhetG2AndHetG = hetG2.CombineGenotypes(hetG, genotypeRepository, RNG);
Genotype resultOfhetG2AndhetG2 = hetG2.CombineGenotypes(hetG2, genotypeRepository, RNG);
if (ToString() == resultOfDomGAndDomG.ToString()) //AA X AA
{
PossibleParentalGenotypes.Add(domG);
PossibleParentalGenotypes.Add(domG);
}
if (ToString() == resultOfDomGAndRecG.ToString()) // AA X aa
{
PossibleParentalGenotypes.Add(domG);
PossibleParentalGenotypes.Add(recG);
}
if (ToString() == resultOfHetGAndDomG.ToString()) // Aa X AA
{
PossibleParentalGenotypes.Add(domG);
PossibleParentalGenotypes.Add(hetG);
}
if (ToString() == resultOfHetGAndHetG.ToString()) // Aa X Aa
{
PossibleParentalGenotypes.Add(hetG);
PossibleParentalGenotypes.Add(hetG);
}
if (ToString() == resultOfHetGAndRecG.ToString()) //Aa X aa
{
PossibleParentalGenotypes.Add(recG);
PossibleParentalGenotypes.Add(hetG);
}
if (ToString() == resultOfRecGAndRecG.ToString()) // aa X aa
{
PossibleParentalGenotypes.Add(recG);
PossibleParentalGenotypes.Add(recG);
}
if (ToString() == resultOfhetG2AndRecG.ToString()) // aA X aa
{
PossibleParentalGenotypes.Add(hetG); //not HG2 as HG2 is actually the same as hetG as aA = Aa
PossibleParentalGenotypes.Add(recG);
}
if (ToString() == resultOfhetG2AndDomG.ToString()) //aA X AA
{
PossibleParentalGenotypes.Add(hetG);
PossibleParentalGenotypes.Add(domG);
}
if (ToString() == resultOfhetG2AndHetG.ToString()) //aA X Aa
{
PossibleParentalGenotypes.Add(hetG);
PossibleParentalGenotypes.Add(hetG);
}
if (ToString() == resultOfhetG2AndhetG2.ToString()) //aA X aA
{
PossibleParentalGenotypes.Add(hetG);
PossibleParentalGenotypes.Add(hetG);
}
return(PossibleParentalGenotypes);
}
