public SimulationBatch Create(IModelCoreSimulation modelCoreSimulation, SimulationBatchOptions simulationBatchOptions)
{
var simulationBatch = Create();
simulationBatch.Initialize(modelCoreSimulation, simulationBatchOptions);
return(simulationBatch);
}
public override void GlobalContext()
{
base.GlobalContext();
_simulationBatchOptions = new SimulationBatchOptions
{
VariableMolecules = new[]
{
new[] { "Organism", "Kidney", "Intracellular", "Caffeine" }.ToPathString(),
new[] { "Organism", "Kidney", "Intracellular", "NOT_THERE" }.ToPathString()
}
};
}
public override void GlobalContext()
{
base.GlobalContext();
_simulationBatchOptions = new SimulationBatchOptions
{
VariableParameters = new[]
{
new[] { "Organism", "NOT THERE", "Volume" }.ToPathString(),
new[] { "Organism", "Hematocrit" }.ToPathString(),
}
};
}
public override void GlobalContext()
{
base.GlobalContext();
_simulationBatchOptions = new SimulationBatchOptions
{
VariableMolecule = new[] { "Organism", "Kidney", "Intracellular", "Caffeine" }.ToPathString(),
VariableParameter = new[] { "Organism", "Liver", "Volume" }.ToPathString(),
CalculateSensitivity = true
};
sut = _simulationBatchFactory.Create(_simulation, _simulationBatchOptions);
}
public void Initialize(IModelCoreSimulation simulation, SimulationBatchOptions simulationBatchOptions)
{
_simulationPersistableUpdater.UpdateSimulationPersistable(simulation);
//SimModel optionally caches XML used for loading a simulation as string.
//This XML string was used e.g. by the old Matlab-/R-Toolbox when saving a simulation to XML.
//C++ export also depends on the original XML string at the moment (not quite clear why).
//Because per default XML is NOT cached, we need to set the KeepXML-option to true BEFORE loading a simulation.
_simModelBatch.KeepXMLNodeInSimModelSimulation = true;
_simModelBatch.InitializeWith(simulation, simulationBatchOptions.Parameters, simulationBatchOptions.Molecules, simulationBatchOptions.CalculateSensitivity);
//This needs to be done after initialization of the SimModelBatch so that we can check parameters
validate(simulationBatchOptions);
_simulationBatchOptions = simulationBatchOptions;
}
public override void GlobalContext()
{
base.GlobalContext();
_simulationBatchOptions = new SimulationBatchOptions
{
VariableMolecules = new[]
{
new[] { "Organism", "Kidney", "Intracellular", "Caffeine" }.ToPathString()
},
VariableParameters = new[]
{
new[] { "Organism", "Liver", "Volume" }.ToPathString(),
new[] { "Organism", "Hematocrit" }.ToPathString(),
}
};
sut = _simulationBatchFactory.Create(_simulation, _simulationBatchOptions);
}
public ConcurrentRunSimulationBatch(IModelCoreSimulation simulation, SimulationBatchOptions simulationBatchOptions)
{
Simulation = simulation;
SimulationBatchOptions = simulationBatchOptions;
Id = generateId();
}
private void validate(SimulationBatchOptions simulationBatchOptions)
{
validate(simulationBatchOptions.Molecules, _simModelBatch.VariableMoleculePaths);
validate(simulationBatchOptions.Parameters, _simModelBatch.VariableParameterPaths);
}