Exemplo n.º 1
0
        public static void SaveWisdom()
        {
            byte *wisd = fftw_export_wisdom_to_string();
            uint  i;

            for (i = 0; (*(wisd + i)) != 0; i++)
            {
                ;
            }
            try
            {
                FileRW fN;
                if ((fN = FileRW.Open(wisdom_path, FileRW.Action.CreateAlways, FileRW.Access.Write)) != null)
                {
                    fN.Write(wisd, i);
                    fN.Close();
                }
                fftw_free(wisd);
            }
            catch
            {}
        }
Exemplo n.º 2
0
        protected bool LoadSlice(int iSlice)
        {
            string lwd;
            FileRW fN;
            uint   nr;

            lwd = SliceFilename + iSlice.ToString("00000") + ".slice_coo";
            if ((fN = FileRW.Open(lwd, FileRW.Action.Open, FileRW.Access.Read)) != null)
            {
                fixed(uint *nat = &NAtoms)
                fixed(double *cuth = &CurSliThickness)
                {
                    if (fN.Read((byte *)nat, sizeof(int)) != sizeof(int))
                    {
                        return(false);
                    }
                    if (fN.Read(cuth, 1) != sizeof(double))
                    {
                        return(false);
                    }
                }
                if (NAtoms > 0)
                {
                    x     = new double[(int)NAtoms];
                    y     = new double[(int)NAtoms];
                    z     = new double[(int)NAtoms];
                    DW    = new double[(int)NAtoms];
                    ads   = new double[(int)NAtoms];
                    occ   = new double[(int)NAtoms];
                    type  = new int[(int)NAtoms];
                    type_ = new int[(int)NAtoms];

                    nr = 0;
                    fixed(double *xx = x, yy = y, zz = z, DDW = DW, aads = ads, oocc = occ)
                    fixed(int *t = type, t_ = type_)
                    {
                        nr += fN.Read(xx, NAtoms);
                        nr += fN.Read(yy, NAtoms);
                        nr += fN.Read(zz, NAtoms);                               // z in Angstrems !!!!
                        nr += fN.Read(DDW, NAtoms);
                        nr += fN.Read(aads, NAtoms);
                        nr += fN.Read(oocc, NAtoms);
                        nr += fN.Read((byte *)t, sizeof(int) * NAtoms);
                        nr += fN.Read((byte *)t_, sizeof(int) * NAtoms);
                    }
                    if (nr != NAtoms * (6 * sizeof(double) + 2 * sizeof(int)))
                    {                     // add code to find and display the reason
                        Console.WriteLine("Only " + nr + " bytes are read from" + lwd);
                        fN.Close();
                        return(false);
                    }
                }
            }
            else
            {
                return(false);
            }

            fN.Close();
            return(true);
        }
Exemplo n.º 3
0
        override public void StartCalculations()
        {
            string   ostr;
            int      iSTEMline, iSTEMpoint;
            DateTime start;
            TimeSpan period;

            start = DateTime.Now;
            Console.WriteLine("\n****************** MS with inline potentials started ********************");

            if (!PrepareCurves())
            {
                Console.WriteLine("Can't create curves, exiting");
                return;
            }

            // Создание планов FFT
            Console.WriteLine("\nCreating FFT plans for " + N + "*" + M + " transformations");
            SFT_backward.MakePlan(data, N, M, -1);
            SFT_direct.MakePlan(data, N, M, 1);
            Console.WriteLine("\nInitial wave is " + IniWaveType.ToString());
            Console.WriteLine("Potential type is " + PotType.ToString());
            Calc.a                  = a;
            Calc.b                  = b;
            Calc.gam                = gam;
            Calc.N                  = N;
            Calc.M                  = M;
            Calc.E                  = E;
            Calc.data               = data;
            Calc.PotType            = PotType;
            Calc.atrad              = atrad;
            Calc.dela               = dela;
            Calc.CurveLength        = CurveLength;
            Calc.CurveHolder        = (double *)PotCurve.BaseAddress;
            Calc.NTypes             = NTypes;
            Calc.NSlices            = NSlices;
            Calc.IsSaveWaves        = IsSaveWaves;
            Calc.IsSaveDiffractions = IsSaveDiffractions;
            Calc.IsSaveSTEM         = (IniWaveType == MSProject.IniWaveTypes.STEMshift);
            Calc.SFT_direct         = SFT_direct;
            Calc.SFT_backward       = SFT_backward;
            //			int iE, iBT, iBS, iCA, iDf, iCs, iCT ;  // moved to MyProject class definition
            for (iE = 0; iE < Emat.Length; iE++)
            {
                Calc.E = E = Emat[iE];
                for (iBT = 0; iBT < Math.Max(BeamTilt.Length, 1); iBT++)
                {
                    X_beamtilt = Y_beamtilt = 0;
                    if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                    {
                        try
                        {
                            X_beamtilt = BeamTilt[iBT][0] / 1000.0;
                            Y_beamtilt = BeamTilt[iBT][1] / 1000.0;
                        }
                        catch
                        {
                        }
                    }
                    if (IniWaveType == MSProject.IniWaveTypes.PlaneWave)
                    {
                        try
                        {
                            X_beamtilt = BeamTilt[iBT][0];
                            Y_beamtilt = BeamTilt[iBT][1];
                        }
                        catch
                        {
                        }
                    }
                    for (iBS = 0; iBS < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(BeamShift.Length, 1):1); iBS++)
                    {
                        if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.Precalculated) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                        {
                            try
                            {
                                X_beamshift = BeamShift[iBS][0];
                                Y_beamshift = BeamShift[iBS][1];
                            }
                            catch
                            {
                                X_beamshift = Y_beamshift = 0.5;
                            }
                        }
                        for (iCA = 0; iCA < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(ConvAngles.Length, 1):1); iCA++)
                        {
                            if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.Precalculated) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                            {
                                try
                                {
                                    ConvAngle      = ConvAngles[iCA][0];
                                    ConvAngleInner = ConvAngles[iCA][1];
                                }
                                catch
                                {
                                    ConvAngle      = 0.3;
                                    ConvAngleInner = 0;
                                }
                            }
                            for (iCs = 0; iCs < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(Csmat.Length, 1):1); iCs++)
                            {
                                if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.Precalculated) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                {
                                    try
                                    {
                                        Cs = Csmat[iCs];
                                    }
                                    catch
                                    {
                                        Cs = 0;
                                    }
                                }
                                for (iDf = 0; iDf < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(Dfmat.Length, 1):1); iDf++)
                                {
                                    if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.Precalculated) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                    {
                                        try
                                        {
                                            Df = Dfmat[iDf];
                                        }
                                        catch
                                        {
                                            Df = 0;
                                        }
                                    }
                                    for (iCT = 0; iCT < Math.Max(CrystalTilt.Length, 1); iCT++)
                                    {
                                        try
                                        {
                                            X_tilt_crystal = Calc.X_tilt_crystal = CrystalTilt[iCT][0] / 1000.0;
                                            Y_tilt_crystal = Calc.Y_tilt_crystal = CrystalTilt[iCT][1] / 1000.0;
                                        }
                                        catch
                                        {
                                            Calc.X_tilt_crystal = Calc.Y_tilt_crystal = 0.0;
                                        }
                                        for (TVi = 0; TVi < TVNumber; TVi++)
                                        {
                                            if ((IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                            {
                                                iSTEMline  = (int)Math.Floor((double)iBS / STEM_N);
                                                iSTEMpoint = iBS % STEM_N;
                                                if ((iSTEMpoint == 0) && (iCA == 0) && (iCs == 0) && (iDf == 0) && (iCT == 0) && (TVi == 0))
                                                {
                                                    ostr = "\nLine " + iSTEMline + " (" + STEM_M + ")\n#";
                                                }
                                                else
                                                {
                                                    ostr = "#";
                                                }
                                                if ((TVNumber > 1) && (TVi == TVNumber - 1))
                                                {
                                                    ostr += "!";
                                                }
                                            }
                                            else
                                            {
                                                ostr  = "\n*** " + (E / 1000.0).ToString("###0.0") + "kV";
                                                ostr += ", CT(" + X_tilt_crystal.ToString("0.0###") + "," + Y_tilt_crystal.ToString("0.0###") + ")";
                                                ostr += ", BT(" + X_beamtilt.ToString("0.0###") + "," + Y_beamtilt.ToString("0.0###") + ")";
                                                ostr += "\n*** BS(" + X_beamshift.ToString("0.0###") + "," + Y_beamshift.ToString("0.0###") + ")";
                                                ostr += ", CA(" + ConvAngle.ToString("0.0###") + "," + ConvAngleInner.ToString("0.0###") + ")";
                                                ostr += ", Df" + Df.ToString("###0.0") + "A";
                                                ostr += ", Cs" + (Cs / 1e7).ToString("###0.0") + "mm\n";
                                            }
                                            Console.Write(ostr);

                                            // Создание начальной волны
                                            if (!CreateInitialWave())
                                            {
                                                Console.WriteLine("Can't create initial wave, exiting");
                                                return;
                                            }
                                            Calc.CurThickness = StartThickness;                                            // in the case of precalculated wave - thickness of this wave
                                            if (IsCalcAll)
                                            {
                                                ThWaves = new double[] { c + StartThickness - 0.00001 }
                                            }
                                            ;
                                            Calc.ThWaves = ThWaves;

                                            // Начало мултислайса
                                            Calc.RunCalculation();
                                        } // different phonon configurations (TVNumber)
                                    }     // crystal tilt cycle
                                }         // Df cycle
                            }             // Cs cycle
                        }                 // Convergence angle cycle
                    }                     // beam shift cycle
                }                         // beam tilt cycle
            }                             // E cycle



            if (this.IsContinue)
            {
                System.IO.File.Copy(Calc.LastSavedWave,
                                    Path.Combine(WorkingDirectoryName, "last.wav"), true);
            }
            if (IniWaveType == IniWaveTypes.STEMshift)
            {
                FlushSTEMfile();
            }

            if (SliceTmpDirectory.Length > 0)
            {
                Directory.Delete(SliceTmpDirectory, true);
            }
            period = DateTime.Now - start;
            Console.WriteLine("\n****** MS finished, total time " + period.ToString() + " ********************");
        }

        bool SaveSlices()
        {
            double[] x, y, z, DW, ads, occ;
            double   CurThickness = 0;

            int[]  type, type_;
            int    i, j, jj, js;
            string lwd;
            uint   nas;
            FileRW fN;

            lwd = Path.Combine(WorkingDirectoryName, "Slice stack " + " (" + DateTime.Now.ToShortDateString() + " " + DateTime.Now.Hour + "_" + DateTime.Now.Minute + "_" + DateTime.Now.Second + ")");
            if (!Directory.Exists(lwd))
            {
                try
                {
                    Directory.CreateDirectory(lwd);
                }
                catch (Exception e)
                {
                    Console.WriteLine("Can't create working directory:\n" + e.ToString());
                    return(false);
                }
            }
            SliceTmpDirectory  = lwd;
            Calc.SliceFilename = Path.Combine(lwd, "Slice ");
            bool repeat;

            for (i = js = 0; i < NSlices; i++)
            {
                repeat = false;
memalo:

                try
                {
                    nas   = (uint)NASlices[i];
                    x     = new double[(int)nas];
                    y     = new double[(int)nas];
                    z     = new double[(int)nas];
                    DW    = new double[(int)nas];
                    ads   = new double[(int)nas];
                    occ   = new double[(int)nas];
                    type  = new int[(int)nas];
                    type_ = new int[(int)nas];
                }
                catch
                {
                    if (repeat)
                    {
                        Console.WriteLine("Can't allocate memory for buffers");
                        return(false);
                    }
                    repeat = true;
                    GC.Collect();
                    goto memalo;
                }
                for (j = js, jj = 0; j < js + (int)nas; jj++, j++)
                {
                    x[jj]     = ((AtomRec)Atoms[j]).x;
                    y[jj]     = ((AtomRec)Atoms[j]).y;
                    z[jj]     = (((AtomRec)Atoms[j]).z * c - CurThickness);
                    DW[jj]    = ((AtomRec)Atoms[j]).DW;
                    ads[jj]   = ((AtomRec)Atoms[j]).ads;
                    occ[jj]   = ((AtomRec)Atoms[j]).occ;
                    type[jj]  = ((AtomRec)Atoms[j]).type;
                    type_[jj] = ((AtomRec)Atoms[j]).type_;
                }
                CurThickness += (double)ThSlices[i];
                js           += (int)nas;
                lwd           = Calc.SliceFilename + (i + 1).ToString("00000") + ".slice_coo";
                if ((fN = FileRW.Open(lwd, FileRW.Action.CreateAlways, FileRW.Access.Write)) != null)
                {
                    uint   nw = 0;
                    bool   sff;
                    double cth = (double)ThSlices[i];
                    unsafe
                    {
                        nw += fN.Write((byte *)&nas, sizeof(int));
                        nw += fN.Write(&cth, 1);
                        if (nas > 0)
                        {
                            fixed(double *xx = x, yy = y, zz = z, DDW = DW, aads = ads, oocc = occ)
                            fixed(int *t = type, t_ = type_)
                            {
                                nw += fN.Write(xx, nas);
                                nw += fN.Write(yy, nas);
                                nw += fN.Write(zz, nas);
                                nw += fN.Write(DDW, nas);
                                nw += fN.Write(aads, nas);
                                nw += fN.Write(oocc, nas);
                                nw += fN.Write((byte *)t, sizeof(int) * nas);
                                nw += fN.Write((byte *)t_, sizeof(int) * nas);
                            }
                        }
                        sff = (nw != nas * (6 * sizeof(double) + 2 * sizeof(int)) + sizeof(double) + sizeof(int));
                    }
                    fN.Close();
                    if (sff)
                    {                     // add code to find and display the reason
                        Console.WriteLine("Only " + nw + " bytes are written to " + lwd);
                        fN.Close();
                        return(false);
                    }
                }
                else
                {
                    return(false);
                }
                x    = y = z = DW = ads = occ = null;
                type = type_ = null;
                Console.Write("\rSlice " + (i + 1) + " is written      ");
            }
            Console.WriteLine("\r" + i + " slices are saved       ");
            GC.Collect();
            return(true);
        }
    }
Exemplo n.º 4
0
        override public void StartCalculations()
        {
            DateTime start;
            string   ostr;
            int      iSTEMline, iSTEMpoint;
            TimeSpan period;

            start = DateTime.Now;
            Console.WriteLine("\n****************** MS with reused potentials started ********************");

            // Создание планов FFT
            Console.WriteLine("\nCreating FFT plans for " + N + "*" + M + " transformations");
            SFT_backward.MakePlan(data, N, M, -1);
            SFT_direct.MakePlan(data, N, M, 1);

            Calc.a                  = a;
            Calc.b                  = b;
            Calc.gam                = gam;
            Calc.N                  = N;
            Calc.M                  = M;
            Calc.E                  = E;
            Calc.data               = data;
            Calc.NSlices            = NSlices;
            Calc.ThSlices           = ThSlices;
            Calc.IsSaveWaves        = IsSaveWaves;
            Calc.IsSaveDiffractions = IsSaveDiffractions;
            Calc.IsSaveSTEM         = (IniWaveType == MSProject.IniWaveTypes.STEMshift);
            Calc.SFT_direct         = SFT_direct;
            Calc.SFT_backward       = SFT_backward;

            Console.WriteLine("\nInitial wave is " + IniWaveType.ToString());

//			int iE, iBT, iBS, iCA, iDf, iCs, iCT ; // moved to MyProject class definition
            for (iE = 0; iE < Emat.Length; iE++)
            {
                Calc.E = E = Emat[iE];
                // Расчет и сохранение слоев
                if (!GeneratePG())
                {
                    Console.WriteLine("Can't create slices, exiting");
                    return;
                }
                for (iCT = 0; iCT < Math.Max(CrystalTilt.Length, 1); iCT++)
                {
                    try
                    {
                        X_tilt_crystal = CrystalTilt[iCT][0] / 1000.0;
                        Y_tilt_crystal = CrystalTilt[iCT][1] / 1000.0;
                    }
                    catch
                    {
                        Y_tilt_crystal = 0.0;
                    }

                    // создание пропагаторов
                    GenerateProps();
                    Calc.SliList  = SliList;
                    Calc.PropList = PropList;


                    for (iBT = 0; iBT < Math.Max(BeamTilt.Length, 1); iBT++)
                    {
                        X_beamtilt = Y_beamtilt = 0;
                        if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                        {
                            try
                            {
                                X_beamtilt = BeamTilt[iBT][0] / 1000.0;
                                Y_beamtilt = BeamTilt[iBT][1] / 1000.0;
                            }
                            catch
                            {
                            }
                        }
                        if (IniWaveType == MSProject.IniWaveTypes.PlaneWave)
                        {
                            try
                            {
                                X_beamtilt = BeamTilt[iBT][0];
                                Y_beamtilt = BeamTilt[iBT][1];
                            }
                            catch
                            {
                            }
                        }
                        for (iBS = 0; iBS < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(BeamShift.Length, 1):1); iBS++)
                        {
                            if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                            {
                                try
                                {
                                    X_beamshift = BeamShift[iBS][0];
                                    Y_beamshift = BeamShift[iBS][1];
                                }
                                catch
                                {
                                    X_beamshift = Y_beamshift = 0.5;
                                }
                            }
                            for (iCA = 0; iCA < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(ConvAngles.Length, 1):1); iCA++)
                            {
                                if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                {
                                    try
                                    {
                                        ConvAngle      = ConvAngles[iCA][0];
                                        ConvAngleInner = ConvAngles[iCA][1];
                                    }
                                    catch
                                    {
                                        ConvAngle      = 0.3;
                                        ConvAngleInner = 0;
                                    }
                                }
                                for (iCs = 0; iCs < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(Csmat.Length, 1):1); iCs++)
                                {
                                    if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                    {
                                        try
                                        {
                                            Cs = Csmat[iCs];
                                        }
                                        catch
                                        {
                                            Cs = 0;
                                        }
                                    }
                                    for (iDf = 0; iDf < (((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))?Math.Max(Dfmat.Length, 1):1); iDf++)
                                    {
                                        if ((IniWaveType == MSProject.IniWaveTypes.Converged) || (IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                        {
                                            try
                                            {
                                                Df = Dfmat[iDf];
                                            }
                                            catch
                                            {
                                                Df = 0;
                                            }
                                        }


                                        if ((IniWaveType == MSProject.IniWaveTypes.STEMshift))
                                        {
                                            iSTEMline  = (int)Math.Floor((double)iBS / STEM_N);
                                            iSTEMpoint = iBS % STEM_N;
                                            if ((iSTEMpoint == 0) && (iCA == 0) && (iCs == 0) && (iDf == 0) && (iCT == 0))
                                            {
                                                ostr = "\nLine " + iSTEMline + " (" + STEM_M + ")\n#";
                                            }
                                            else
                                            {
                                                ostr = "#";
                                            }
                                        }
                                        else
                                        {
                                            ostr  = "\n*** " + (E / 1000.0).ToString("###0.0") + "kV";
                                            ostr += ", CT(" + X_tilt_crystal.ToString("0.0###") + "," + Y_tilt_crystal.ToString("0.0###") + ")";
                                            ostr += ", BT(" + X_beamtilt.ToString("0.0###") + "," + Y_beamtilt.ToString("0.0###") + ")";
                                            ostr += "\n*** BS(" + X_beamshift.ToString("0.0###") + "," + Y_beamshift.ToString("0.0###") + ")";
                                            ostr += ", CA(" + ConvAngle.ToString("0.0###") + "," + ConvAngleInner.ToString("0.0###") + ")";
                                            ostr += ", Df" + Df.ToString("###0.0") + "A";
                                            ostr += ", Cs" + (Cs / 1e7).ToString("###0.0") + "mm\n";
                                        }
                                        Console.Write(ostr);

                                        // Создание начальной волны
                                        if (!CreateInitialWave())
                                        {
                                            Console.WriteLine("Can't create initial wave, exiting");
                                            return;
                                        }
                                        Calc.CurThickness = StartThickness;
                                        if (IsCalcAll)
                                        {
                                            this.ThWaves = new double[] { c + StartThickness - 0.00001 }
                                        }
                                        ;
                                        Calc.ThWaves = ThWaves;

                                        // Начало мултислайса

                                        Calc.RunCalculation();
                                    } // Df cycle
                                }     // Cs cycle
                            }         // Convergence angle cycle
                        }             // beam shift cycle
                    }                 // beam tilt cycle
                }                     // crystal tilt cycle
            }                         // E cycle


            if (IsContinue)
            {
                System.IO.File.Copy(Calc.LastSavedWave,
                                    Path.Combine(this.WorkingDirectoryName, "last.wav"), true);
            }
            if (IniWaveType == IniWaveTypes.STEMshift)
            {
                FlushSTEMfile();
            }

            period = DateTime.Now - start;
            Console.WriteLine("\n****** MS finished, total time " + period.ToString() + " ********************");
        }

        bool GeneratePG()
        {
            int    i, j, k;
            MemMan iM;
            uint   NMMs;
            float  progress;

            int[] PropSliTable = new int[NSlices];
            Props    = new ArrayList();
            SliList  = new double *[NSlices];
            PropList = new double *[NSlices];
            for (i = 0; i < NSlices; i++)
            {
                for (j = 0; j < Props.Count; j++)
                {
                    if (Math.Abs((double)Props[j] - (double)ThSlices[i]) < 0.000001)
                    {
                        break;
                    }
                }
                if (j == Props.Count)
                {
                    j = Props.Add(ThSlices[i]);
                }
                PropSliTable[i] = j;
            }

            PropsP = new double *[Props.Count];

            MMList = new ArrayList((int)(NSlices + Props.Count));
            for (i = 0; i < NSlices + Props.Count; i++)
            {
                iM = new MemMan();
                if (iM.Allocate(MemRequested()))
                {
                    MMList.Add(iM);
                }
                else
                {
                    break;
                }
            }
            NMMs = (uint)MMList.Count;
            if (NMMs < NSlices + Props.Count)
            {
                Console.WriteLine("Can't allocate all data in memory, only " + NMMs + " pages are available, " + (NSlices + Props.Count) + " requested,\nuse inline calculation");
                return(false);
            }
            for (i = 0; i < NSlices; i++)
            {
                Console.WriteLine("Creating slice number " + i.ToString("0000") + " from " + (uint)NASlices[i] + " atoms using " + PotType.ToString());
                //((MemMan)MMList[i]).Lock(0,MemRequested()) ;
                SliList[i] = (double *)((MemMan)MMList[i]).BaseAddress;
                if ((uint)NASlices[i] > 0)
                {
                    ExtractSlice(i);
                    fixed(double *_x = x, _y = y, _dw = DW, _ads = ads, _occ = occ)
                    {
                        fixed(int *_type_ = type_, _type = type)
                        {
                            switch (PotType)
                            {
                            case PotTypes.rs_DT_DW_periodic:
                                Potential_rs_DT_DW_periodic(a, b, gam, atrad, N, M, (uint)NASlices[i], _x, _y, _dw, _ads, _occ, _type, SliList[i], &progress);
                                break;

                            case PotTypes.rs_DT_DW_cut:
                                Potential_rs_DT_DW_cutpot(a, b, gam, atrad, N, M, (uint)NASlices[i], _x, _y, _dw, _ads, _occ, _type, SliList[i], &progress);
                                break;

                            case PotTypes.rs_curve_DW_periodic:
                                Potential_rs_curve_DW_periodic(a, b, gam, atrad, N, M, (uint)NASlices[i], _x, _y, _ads, _occ, _type_, (double *)PotCurve.BaseAddress, CurveLength, dela, SliList[i], &progress);
                                break;

                            case PotTypes.rs_curve_DW_cut:
                                Potential_rs_curve_DW_cutpot(a, b, gam, atrad, N, M, (uint)NASlices[i], _x, _y, _ads, _occ, _type_, (double *)PotCurve.BaseAddress, CurveLength, dela, SliList[i], &progress);
                                break;

                            case PotTypes.rec_DT_DW:
                                Potential_rec_DT_DW(a, b, gam, Nmult, Mmult, N, M, (uint)NASlices[i], 0, M, _x, _y, _dw, _ads, _occ, _type, SliList[i], &progress);
                                SFT_backward.MakeSFT(SliList[i]);
                                break;

                            case PotTypes.rec_curve_DW:
                                Potential_rec_curve_DW(a, b, gam, Nmult, Mmult, N, M, (uint)NASlices[i], 0, M, _x, _y, _ads, _occ, _type_, (double *)PotCurve.BaseAddress, CurveLength, ds, SliList[i], &progress);
                                SFT_backward.MakeSFT(SliList[i]);
                                break;

                            default:
                                Console.WriteLine("Potential " + PotType.ToString() + " is not supported");
                                return(false);
                            }
                        }
                    }
                }
                if (IsSaveSlices)
                {
                    SaveSlice(i);
                }
            }
            if (IsPotRec)
            {
                a *= Nmult; b *= Mmult;
            }

            //Создание PG из слайсов
            double lambda = 0.387818 / Math.Sqrt(E / 1000.0 * (1.0 + 0.978459e-3 * E / 1000)); // E in V
            double K      = lambda * Math.Sqrt(1.0 + Math.Pow((0.0242621 / lambda), 2));

            if (IsPotRec)
            {
                K *= (N * M);
            }
            for (i = 0; i < NSlices; i++)
            {
                double *pbuf = SliList[i];
                double  aR, aI;
                for (j = 0; j < M; j++)
                {
                    for (k = 0; k < N; k++)
                    {
                        aR = K * *pbuf;
                        aI = Math.Exp(-*(pbuf + 1) * K);
                        *pbuf = Math.Cos(aR) * aI;
                        *(++pbuf) = -Math.Sin(aR) * aI;
                        pbuf++;
                    }
                }                 // y-cycle
            }

            Atoms = null;            // free a memory occupied by the model
            GC.Collect();

            for (i = 0; i < Props.Count; i++)
            {
                PropsP[i] = (double *)((MemMan)MMList[(int)(i + NSlices)]).BaseAddress;
            }
            for (i = 0; i < NSlices; i++)
            {
                PropList[i] = PropsP[PropSliTable[i]];
            }

            return(true);
        }

        bool GenerateProps()
        {
            int   i;
            float progress;

            for (i = 0; i < Props.Count; i++)
            {
                Console.WriteLine("Creating propagator for " + ((double)Props[i]).ToString("##0.000000") + " A");
                CreatePropagator(a, b, gam, (double)Props[i], E, X_tilt_crystal, Y_tilt_crystal, N, M, PropsP[i], &progress);
            }
            return(true);
        }

        void ExtractSlice(int i)
        {
            uint nas = (uint)NASlices[i];

            x     = new double[(int)nas];
            y     = new double[(int)nas];
            DW    = new double[(int)nas];
            ads   = new double[(int)nas];
            occ   = new double[(int)nas];
            type  = new int[(int)nas];
            type_ = new int[(int)nas];
            int j = 0;

            foreach (AtomRec at in Atoms)
            {
                if (at.sn == i)
                {
                    x[j]     = at.x;
                    y[j]     = at.y;
                    DW[j]    = at.DW;
                    ads[j]   = at.ads;
                    occ[j]   = at.occ;
                    type[j]  = at.type;
                    type_[j] = at.type_;
                    j++;
                }
            }
        }

        /// <summary>
        /// Saves slices in real space
        /// </summary>
        /// <returns></returns>
        bool SaveSlice(int iSlice)         // save slices in real space
        {
            // a*Nmult, b*Mmult
            FileRW fN;
            string lwd, SavedFilename;

            lwd = Path.Combine(WorkingDirectoryName, "Slice stack");
            if (!Directory.Exists(lwd))
            {
                try
                {
                    Directory.CreateDirectory(lwd);
                }
                catch (Exception e)
                {
                    Console.WriteLine("Can't create working directory:\n" + e.ToString());
                    return(false);
                }
            }
            SavedFilename = Path.Combine(lwd, "Slice_" + iSlice.ToString("0000") + ".slice");
            if ((fN = FileRW.Open(SavedFilename, FileRW.Action.CreateAlways, FileRW.Access.Write)) != null)
            {
                byte[] sout = new byte[160];
                string Sout;
                uint   nw;
                nw = fN.Write(SliList[iSlice], N * M * (uint)2);
                if (nw != N * M * (uint)2 * sizeof(double))
                {                 // add code to find and display the reason
                    Console.WriteLine("Only " + nw + " bytes out of " + N * M * (uint)2 * sizeof(double) + " are written to\n" + SavedFilename);
                    fN.Close();
                    SavedFilename = null;
                    return(false);
                }
                Sout = String.Format("___ {0,12:g10} {1,12:g10} {2,12:g10} {3,10:g5} {4,10:g5} {5,10:g8} {6,10:g} {7,00000} {8,00000} {9,10:g} {10,5:n0} ",
                                     a * Nmult, b * Mmult, ThSlices[iSlice], Math.PI / 2.0, Math.PI / 2.0, gam, -1.0, N, M, iSlice, NSlices);
                for (int i = 0; i < 160; i++)
                {
                    sout[i] = (i < Sout.Length)?System.Convert.ToByte(Sout[i]):(byte)0;
                }
                fN.Write(sout, 160);
                fN.Close();
                return(true);
            }
            else
            {
                SavedFilename = null;
                return(false);
            }
        }
    }