public bool exptEquals(SpatialContext other)
{
if (this.Position.exptEquals(other.Position) == false)
{
Console.Write("SpatialContext objects not equal: ");
Console.WriteLine("this.Position=" + this.Position + "; other.Position=" + other.Position);
return false;
}
if (this.Velocity.exptEquals(other.Velocity) == false)
{
Console.Write("SpatialContext objects not equal: ");
Console.WriteLine("this.Velocity=" + this.Velocity + "; other.Velocity=" + other.Velocity);
return false;
}
if (this.Radius != other.Radius == false)
{
Console.Write("SpatialContext objects not equal: ");
Console.WriteLine("this.Volume=" + this.Radius + "; other.Volume=" + other.Radius);
return false;
}
if (this.Orientation.exptEquals(other.Orientation) == false)
{
Console.Write("SpatialContext objects not equal: ");
Console.WriteLine("this.Orientation=" + this.Orientation + "; other.Orientation=" + other.Orientation);
return false;
}
return true;
}
/// <summary>
/// Constructor for creating a cell instance with a cell definition
/// </summary>
/// <param name="cellDefinition">
/// A <see cref="CellDefinition"/>
/// </param>
public CellInstance(CellDefinition cellDefinition)
{
this.cellInstanceDefinition = cellDefinition;
SBML.Model model = cellDefinition.getModel();
if (model != null)
{
this.species = cellDefinition.getModel().listOfSpecies;
}
// Initialize the specials Dictionary
this.speciesVariables = new Dictionary<string, double>();
this.localSpeciesVariables = new Dictionary<string, double>();
this.localSpeciesDelta = new Dictionary<string, double>();
this.speciesToIndexMap = new Dictionary<string, int>();
this.indexToSpeciesMap = new Dictionary<int, string>();
// set up the list
this.convertSpeciesListToVariables();
this.components = new List<MuCell.Model.SBML.ExtracellularComponents.ComponentWorldStateBase>();
this.flaggy = new MuCell.Model.SBML.ExtracellularComponents.FlagellaComponent();
cellInstanceSpatialContext = new SpatialContext();
}
/// <summary>
/// Clone SpatialContext
/// </summary>
/// <returns></returns>
public Object Clone()
{
SpatialContext newInstance = new SpatialContext(this.position, this.velocity, this.radius, this.orientation, this.mass);
return newInstance;
}
/// <summary>
/// Secondary constructor that takes a cell definition,
/// a spatial context, a list of species and a species variables dictionary
/// </summary>
/// <param name="cellDefinition">
/// A <see cref="CellDefinition"/>
/// </param>
/// <param name="spatialContext">
/// A <see cref="SpatialContext"/>
/// </param>
/// <param name="species">
/// A <see cref="List`1"/>
/// </param>
/// <param name="speciesVariables">
/// A <see cref="Dictionary`2"/>
/// </param>
public CellInstance(CellDefinition cellDefinition, SpatialContext spatialContext,
List<SBML.Species> species, Dictionary<string, double> speciesVariables,
Dictionary<int, string> indexToSpeciesMap, Dictionary<string, int> speciesToIndexMap,
Solver.SolverBase solver, List<SBML.ExtracellularComponents.ComponentWorldStateBase> components,
System.Random random)
{
this.cellInstanceDefinition = cellDefinition;
this.species = species;
this.speciesVariables = speciesVariables;
this.cellInstanceSpatialContext = spatialContext;
this.indexToSpeciesMap = indexToSpeciesMap;
this.speciesToIndexMap = speciesToIndexMap;
this.solver = solver;
this.components = components;
this.randomObject = random;
this.localSpeciesVariables = new Dictionary<string, double>();
this.localSpeciesDelta = new Dictionary<string, double>();
}
