Exemplo n.º 1
0
        /// <summary>
        /// Helper method for renaming variables in report and manager.
        /// </summary>
        /// <param name="node">The JSON root node.</param>
        /// <param name="changes">List of old and new name tuples.</param>
        public static void RenameVariables(JObject node, Tuple <string, string>[] changes)
        {
            foreach (var manager in JsonUtilities.ChildManagers(node))
            {
                bool managerChanged = false;

                foreach (var replacement in changes)
                {
                    if (manager.Replace(replacement.Item1, replacement.Item2))
                    {
                        managerChanged = true;
                    }
                }
                if (managerChanged)
                {
                    manager.Save();
                }
            }
            foreach (var report in JsonUtilities.ChildrenOfType(node, "Report"))
            {
                foreach (var replacement in changes)
                {
                    JsonUtilities.SearchReplaceReportVariableNames(report, replacement.Item1, replacement.Item2);
                }
            }

            foreach (var simpleGrazing in JsonUtilities.ChildrenOfType(node, "SimpleGrazing"))
            {
                var expression = simpleGrazing["FlexibleExpressionForTimingOfGrazing"].ToString();
                if (!string.IsNullOrEmpty(expression))
                {
                    foreach (var replacement in changes)
                    {
                        expression = expression.Replace(replacement.Item1, replacement.Item2);
                    }
                    simpleGrazing["FlexibleExpressionForTimingOfGrazing"] = expression;
                }
            }

            foreach (var compositeFactor in JsonUtilities.ChildrenOfType(node, "CompositeFactor"))
            {
                var specifications = compositeFactor["Specifications"] as JArray;
                if (specifications != null)
                {
                    bool replacementFound = false;
                    foreach (var replacement in changes)
                    {
                        for (int i = 0; i < specifications.Count; i++)
                        {
                            replacementFound  = replacementFound || specifications[i].ToString().Contains(replacement.Item1);
                            specifications[i] = specifications[i].ToString().Replace(replacement.Item1, replacement.Item2);
                        }
                    }
                    if (replacementFound)
                    {
                        compositeFactor["Specifications"] = specifications;
                    }
                }
            }
        }
Exemplo n.º 2
0
        /// <summary>
        /// Changes initial Root Wt to an array.
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion55(JObject root, string fileName)
        {
            foreach (var SOM in JsonUtilities.ChildrenOfType(root, "SoilOrganicMatter"))
            {
                double soilcnr;
                if (SOM["SoilCN"] is JArray)
                {
                    soilcnr = Convert.ToDouble(SOM["SoilCN"][0], CultureInfo.InvariantCulture); // This can happen when importing old APSIM file.
                }
                else
                {
                    soilcnr = Convert.ToDouble(SOM["SoilCN"], CultureInfo.InvariantCulture);
                }
                SOM.Remove("SoilCN");
                double[] thickness = MathUtilities.StringsToDoubles(JsonUtilities.Values(SOM, "Thickness"));

                double[] SoilCNVector = new double[thickness.Length];

                for (int layer = 0; layer < thickness.Length; layer++)
                {
                    SoilCNVector[layer] = soilcnr;
                }

                JsonUtilities.SetValues(SOM, "SoilCN", SoilCNVector);
            }
        }
Exemplo n.º 3
0
        /// <summary>
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion52(JObject root, string fileName)
        {
            foreach (var SOM in JsonUtilities.ChildrenOfType(root, "SoilOrganicMatter"))
            {
                double rootWt = Convert.ToDouble(SOM["RootWt"]);
                SOM.Remove("RootWt");
                double[] thickness = MathUtilities.StringsToDoubles(JsonUtilities.Values(SOM, "Thickness"));

                double   profileDepth   = MathUtilities.Sum(thickness);
                double   cumDepth       = 0;
                double[] rootWtFraction = new double[thickness.Length];

                for (int layer = 0; layer < thickness.Length; layer++)
                {
                    double fracLayer = Math.Min(1.0, MathUtilities.Divide(profileDepth - cumDepth, thickness[layer], 0.0));
                    cumDepth += thickness[layer];
                    rootWtFraction[layer] = fracLayer * Math.Exp(-3.0 * Math.Min(1.0, MathUtilities.Divide(cumDepth, profileDepth, 0.0)));
                }
                // get the actuall FOM distribution through layers (adds up to one)
                double totFOMfraction = MathUtilities.Sum(rootWtFraction);
                for (int layer = 0; layer < thickness.Length; layer++)
                {
                    rootWtFraction[layer] /= totFOMfraction;
                }
                double[] rootWtVector = MathUtilities.Multiply_Value(rootWtFraction, rootWt);

                JsonUtilities.SetValues(SOM, "RootWt", rootWtVector);
            }
        }
Exemplo n.º 4
0
        /// <summary>
        /// Returns a list of child managers recursively.
        /// </summary>
        /// <param name="node">The root node.</param>
        /// <returns>Returns a list of manager models.</returns>
        public static List <ManagerConverter> ChildManagers(JObject node)
        {
            var managers = new List <ManagerConverter>();

            foreach (var manager in JsonUtilities.ChildrenOfType(node, "Manager"))
            {
                managers.Add(new ManagerConverter(manager));
            }
            return(managers);
        }
Exemplo n.º 5
0
        /// <summary>
        /// Changes initial Root Wt to an array.
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion55(JObject root, string fileName)
        {
            foreach (var SOM in JsonUtilities.ChildrenOfType(root, "SoilOrganicMatter"))
            {
                double soilcnr = Convert.ToDouble(SOM["SoilCN"]);
                SOM.Remove("SoilCN");
                double[] thickness = MathUtilities.StringsToDoubles(JsonUtilities.Values(SOM, "Thickness"));

                double[] SoilCNVector = new double[thickness.Length];

                for (int layer = 0; layer < thickness.Length; layer++)
                {
                    SoilCNVector[layer] = soilcnr;
                }

                JsonUtilities.SetValues(SOM, "SoilCN", SoilCNVector);
            }
        }
Exemplo n.º 6
0
        /// <summary>
        /// Changes GsMax to Gsmax350 in all models that implement ICanopy.
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion51(JObject root, string fileName)
        {
            // Create a list of models that might have gsmax.
            // Might need to add in other models that implement ICanopy
            // e.g. OilPalm, AgPastureSpecies, SimpleTree, Sugarcane

            var models = new List <JObject>();

            models.AddRange(JsonUtilities.ChildrenOfType(root, "Leaf"));
            models.AddRange(JsonUtilities.ChildrenOfType(root, "SimpleLeaf"));
            models.AddRange(JsonUtilities.ChildrenOfType(root, "PerennialLeaf"));
            models.AddRange(JsonUtilities.ChildrenOfType(root, "SorghumLeaf"));

            // Loop through all models and rename Gsmax to Gsmax350.
            foreach (var model in models)
            {
                JsonUtilities.RenameProperty(model, "Gsmax", "Gsmax350");
                JsonUtilities.AddConstantFunctionIfNotExists(model, "StomatalConductanceCO2Modifier", "1.0");
            }
        }
Exemplo n.º 7
0
        /// <summary>
        /// Helper method for renaming variables in report and manager.
        /// </summary>
        /// <param name="node">The JSON root node.</param>
        /// <param name="changes">List of old and new name tuples.</param>
        public static bool RenameVariables(JObject node, Tuple <string, string>[] changes)
        {
            bool replacementMade = false;

            foreach (var manager in JsonUtilities.ChildManagers(node))
            {
                foreach (var replacement in changes)
                {
                    if (manager.Replace(replacement.Item1, replacement.Item2))
                    {
                        replacementMade = true;
                    }
                }
                if (replacementMade)
                {
                    manager.Save();
                }
            }
            foreach (var report in JsonUtilities.ChildrenOfType(node, "Report"))
            {
                foreach (var replacement in changes)
                {
                    if (JsonUtilities.SearchReplaceReportVariableNames(report, replacement.Item1, replacement.Item2))
                    {
                        replacementMade = true;
                    }
                }
            }

            foreach (var simpleGrazing in JsonUtilities.ChildrenOfType(node, "SimpleGrazing"))
            {
                var expression = simpleGrazing["FlexibleExpressionForTimingOfGrazing"]?.ToString();
                if (!string.IsNullOrEmpty(expression))
                {
                    foreach (var replacement in changes)
                    {
                        if (expression.Contains(replacement.Item1))
                        {
                            expression      = expression.Replace(replacement.Item1, replacement.Item2);
                            replacementMade = true;
                        }
                    }
                    simpleGrazing["FlexibleExpressionForTimingOfGrazing"] = expression;
                }
            }

            foreach (var compositeFactor in JsonUtilities.ChildrenOfType(node, "CompositeFactor"))
            {
                var specifications = compositeFactor["Specifications"] as JArray;
                if (specifications != null)
                {
                    bool replacementFound = false;
                    foreach (var replacement in changes)
                    {
                        for (int i = 0; i < specifications.Count; i++)
                        {
                            replacementFound  = replacementFound || specifications[i].ToString().Contains(replacement.Item1);
                            specifications[i] = specifications[i].ToString().Replace(replacement.Item1, replacement.Item2);
                        }
                    }
                    if (replacementFound)
                    {
                        replacementMade = true;
                        compositeFactor["Specifications"] = specifications;
                    }
                }
            }

            foreach (JObject variableRef in ChildrenOfType(node, typeof(VariableReference).Name))
            {
                foreach (var replacement in changes)
                {
                    string variableName = variableRef["VariableName"]?.ToString();
                    if (variableName.Contains(replacement.Item1))
                    {
                        replacementMade             = true;
                        variableRef["VariableName"] = variableName?.Replace(replacement.Item1, replacement.Item2);
                    }
                }
            }

            foreach (JObject series in ChildrenOfType(node, nameof(Series)))
            {
                foreach (var change in changes)
                {
                    var from = change.Item1.Replace("[", "").Replace("]", "");
                    var to   = change.Item2.Replace("[", "").Replace("]", "");
                    if (series["XFieldName"]?.ToString() != null && series["XFieldName"].ToString().Contains(from))
                    {
                        replacementMade      = true;
                        series["XFieldName"] = series["XFieldName"].ToString().Replace(from, to);
                    }

                    if (series["YFieldName"]?.ToString() != null && series["YFieldName"].ToString().Contains(from))
                    {
                        replacementMade      = true;
                        series["YFieldName"] = series["YFieldName"].ToString().Replace(from, to);
                    }

                    if (series["X2FieldName"]?.ToString() != null && series["X2FieldName"].ToString().Contains(from))
                    {
                        replacementMade       = true;
                        series["X2FieldName"] = series["X2FieldName"].ToString().Replace(from, to);
                    }

                    if (series["Y2FieldName"]?.ToString() != null && series["Y2FieldName"].ToString().Contains(from))
                    {
                        replacementMade       = true;
                        series["Y2FieldName"] = series["Y2FieldName"].ToString().Replace(from, to);
                    }

                    if (series["Filter"]?.ToString() != null && series["Filter"].ToString().Contains(from))
                    {
                        replacementMade  = true;
                        series["Filter"] = series["Filter"].ToString().Replace(from, to);
                    }
                }
            }

            return(replacementMade);
        }
Exemplo n.º 8
0
        /// <summary>
        /// Changes initial Root Wt to an array.
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion99(JObject root, string fileName)
        {
            // Delete all alias children.
            foreach (var soilNitrogen in JsonUtilities.ChildrenOfType(root, "SoilNitrogen"))
            {
                var parent   = JsonUtilities.Parent(soilNitrogen);
                var nutrient = JsonUtilities.CreateNewChildModel(parent, "Nutrient", "Models.Soils.Nutrients.Nutrient");
                nutrient["ResourceName"] = "Nutrient";
                soilNitrogen.Remove();
            }

            foreach (var manager in JsonUtilities.ChildManagers(root))
            {
                manager.Replace("using Models.Soils;", "using Models.Soils;\r\nusing Models.Soils.Nutrients;");

                manager.Replace("SoilNitrogen.FOMN", ".Nutrient.FOMN");
                manager.Replace("SoilNitrogen.FOMC", ".Nutrient.FOMC");

                if (manager.Replace("Soil.SoilNitrogen.HumicN", "Humic.N"))
                {
                    manager.AddDeclaration("NutrientPool", "Humic", new string[] { "[ScopedLinkByName]" });
                }
                if (manager.Replace("Soil.SoilNitrogen.HumicC", "Humic.C"))
                {
                    manager.AddDeclaration("NutrientPool", "Humic", new string[] { "[ScopedLinkByName]" });
                }

                if (manager.Replace("Soil.SoilNitrogen.MicrobialN", "Microbial.N"))
                {
                    manager.AddDeclaration("NutrientPool", "Microbial", new string[] { "[ScopedLinkByName]" });
                }
                if (manager.Replace("Soil.SoilNitrogen.MicrobialC", "Microbial.C"))
                {
                    manager.AddDeclaration("NutrientPool", "Microbial", new string[] { "[ScopedLinkByName]" });
                }

                if (manager.Replace("Soil.SoilNitrogen.dlt_n_min_res", "SurfaceResidueDecomposition.MineralisedN"))
                {
                    manager.AddDeclaration("CarbonFlow", "SurfaceResidueDecomposition", new string[] { "[LinkByPath(Path=\"[Nutrient].SurfaceResidue.Decomposition\")]" });
                }

                manager.Replace("SoilNitrogen.MineralisedN", "Nutrient.MineralisedN");

                manager.Replace("SoilNitrogen.TotalN", "Nutrient.TotalN");
                if (manager.Replace("SoilNitrogen.TotalN", "Nutrient.TotalN"))
                {
                    manager.RemoveDeclaration("SoilNitrogen");
                    manager.AddDeclaration("INutrient", "Nutrient", new string[] { "[ScopedLinkByName]" });
                }

                manager.Replace("SoilNitrogen.TotalC", "Nutrient.TotalC");
                if (manager.Replace("SoilNitrogen.TotalC", "Nutrient.TotalC"))
                {
                    manager.RemoveDeclaration("SoilNitrogen");
                    manager.AddDeclaration("INutrient", "Nutrient", new string[] { "[ScopedLinkByName]" });
                }

                manager.Replace("SoilNitrogen.mineral_n", "Nutrient.MineralN");
                manager.Replace("SoilNitrogen.Denitrification", "Nutrient.Natm");
                manager.Replace("SoilNitrogen.n2o_atm", "Nutrient.N2Oatm");
                manager.Save();
            }

            foreach (var report in JsonUtilities.ChildrenOfType(root, "Report"))
            {
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.NO3.kgha", "Nutrient.NO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.NH4.kgha", "Nutrient.NH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.Urea.kgha", "Nutrient.Urea.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.PlantAvailableNO3.kgha", "Nutrient.PlantAvailableNO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.PlantAvailableNH4.kgha", "Nutrient.PlantAvailableNH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].NO3.kgha", "[Nutrient].NO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].NH4.kgha", "[Nutrient].NH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].Urea.kgha", "[Nutrient].Urea.kgha");

                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.FOMN", ".Nutrient.FOMN");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.FOMC", ".Nutrient.FOMC");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.HumicN", ".Nutrient.Humic.N");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.HumicC", ".Nutrient.Humic.C");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.MicrobialN", ".Nutrient.Microbial.N");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.MicrobialC", ".Nutrient.Microbial.C");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.urea", ".Nutrient.Urea.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.dlt_n_min_res", ".Nutrient.SurfaceResidue.Decomposition.MineralisedN");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.MineralisedN", ".Nutrient.MineralisedN");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.Denitrification", ".Nutrient.Natm");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.n2o_atm", ".Nutrient.N2Oatm");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.TotalC", ".Nutrient.TotalC");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.TotalN", ".Nutrient.TotalN");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.mineral_n", ".Nutrient.MineralN");
                JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.Nitrification", ".Nutrient.NH4.Nitrification");
            }

            foreach (var series in JsonUtilities.ChildrenOfType(root, "Series"))
            {
                if (series["XFieldName"] != null)
                {
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.NO3.kgha", "Nutrient.NO3.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.NH4.kgha", "Nutrient.NH4.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.Urea.kgha", "Nutrient.Urea.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNO3.kgha", "Nutrient.PlantAvailableNO3.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNH4.kgha", "Nutrient.PlantAvailableNH4.kgha");
                }
                if (series["YFieldName"] != null)
                {
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.NO3.kgha", "Nutrient.NO3.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.NH4.kgha", "Nutrient.NH4.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.Urea.kgha", "Nutrient.Urea.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNO3.kgha", "Nutrient.PlantAvailableNO3.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNH4.kgha", "Nutrient.PlantAvailableNH4.kgha");
                }
            }
        }
Exemplo n.º 9
0
        /// <summary>
        /// Remove SoluteManager.
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion54(JObject root, string fileName)
        {
            foreach (var soluteManager in JsonUtilities.ChildrenOfType(root, "SoluteManager"))
            {
                soluteManager.Remove();
            }

            foreach (var report in JsonUtilities.ChildrenOfType(root, "Report"))
            {
                JsonUtilities.SearchReplaceReportVariableNames(report, "[Soil].NO3N", "[Soil].SoilNitrogen.NO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[Soil].NH4N", "[Soil].SoilNitrogen.NH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[Soil].UreaN", "[Soil].SoilNitrogen.Urea.kgha");
            }

            foreach (var manager in JsonUtilities.ChildManagers(root))
            {
                bool managerChanged = false;
                if (manager.Replace("mySoil.NO3N", "NO3.kgha"))
                {
                    manager.AddDeclaration("ISolute", "NO3", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("mySoil.NH4N", "NH4.kgha"))
                {
                    manager.AddDeclaration("ISolute", "NH4", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("mySoil.UreaN", "Urea.kgha"))
                {
                    manager.AddDeclaration("ISolute", "Urea", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("Soil.NO3N", "NO3.kgha"))
                {
                    manager.AddDeclaration("ISolute", "NO3", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("Soil.NH4N", "NH4.kgha"))
                {
                    manager.AddDeclaration("ISolute", "NH4", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("Soil.UreaN", "Urea.kgha"))
                {
                    manager.AddDeclaration("ISolute", "Urea", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("mySoil.SoilNitrogen.", "SoilNitrogen."))
                {
                    manager.AddDeclaration("SoilNitrogen", "SoilNitrogen", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("Soil.SoilNitrogen.", "SoilNitrogen."))
                {
                    manager.AddDeclaration("SoilNitrogen", "SoilNitrogen", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("soil.SoilNitrogen.", "SoilNitrogen."))
                {
                    manager.AddDeclaration("SoilNitrogen", "SoilNitrogen", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                if (manager.Replace("soil1.SoilNitrogen.", "SoilNitrogen."))
                {
                    manager.AddDeclaration("SoilNitrogen", "SoilNitrogen", new string[] { "[ScopedLinkByName]" });
                    managerChanged = true;
                }
                var declarations = manager.GetDeclarations();
                if (declarations.RemoveAll(declaration => declaration.TypeName == "SoluteManager") > 0)
                {
                    manager.SetDeclarations(declarations);
                    managerChanged = true;
                }

                if (managerChanged)
                {
                    var usingLines = manager.GetUsingStatements().ToList();
                    usingLines.Add("Models.Interfaces");
                    manager.SetUsingStatements(usingLines);
                    manager.Save();
                }
            }
        }
Exemplo n.º 10
0
        /// <summary>
        /// Adds solutes under SoilNitrogen.
        /// </summary>
        /// <param name="root">The root JSON token.</param>
        /// <param name="fileName">The name of the apsimx file.</param>
        private static void UpgradeToVersion53(JObject root, string fileName)
        {
            foreach (var soilNitrogen in JsonUtilities.ChildrenOfType(root, "SoilNitrogen"))
            {
                JsonUtilities.CreateNewChildModel(soilNitrogen, "NO3", "Models.Soils.SoilNitrogenNO3");
                JsonUtilities.CreateNewChildModel(soilNitrogen, "NH4", "Models.Soils.SoilNitrogenNH4");
                JsonUtilities.CreateNewChildModel(soilNitrogen, "Urea", "Models.Soils.SoilNitrogenUrea");
                JsonUtilities.CreateNewChildModel(soilNitrogen, "PlantAvailableNO3", "Models.Soils.SoilNitrogenPlantAvailableNO3");
                JsonUtilities.CreateNewChildModel(soilNitrogen, "PlantAvailableNH4", "Models.Soils.SoilNitrogenPlantAvailableNH4");
            }

            foreach (var report in JsonUtilities.ChildrenOfType(root, "Report"))
            {
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.NO3", "SoilNitrogen.NO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.NH4", "SoilNitrogen.NH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.urea", "SoilNitrogen.Urea.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.PlantAvailableNO3", "SoilNitrogen.PlantAvailableNO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.PlantAvailableNH4", "SoilNitrogen.PlantAvailableNH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].no3", "[SoilNitrogen].NO3.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].nh4", "[SoilNitrogen].NH4.kgha");
                JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].urea", "[SoilNitrogen].Urea.kgha");
            }
            foreach (var manager in JsonUtilities.ChildManagers(root))
            {
                var originalCode = manager.ToString();
                if (originalCode != null)
                {
                    if (originalCode.Contains("SoilNitrogen.NO3"))
                    {
                        manager.Replace("Soil.SoilNitrogen.NO3", "NO3.kgha");
                        manager.Replace("SoilNitrogen.NO3", "NO3.kgha");
                        manager.AddDeclaration("ISolute", "NO3", new string[] { "[ScopedLinkByName]" });
                    }
                    if (originalCode.Contains("SoilNitrogen.NH4"))
                    {
                        manager.Replace("Soil.SoilNitrogen.NH4", "NH4.kgha");
                        manager.Replace("SoilNitrogen.NH4", "NH4.kgha");
                        manager.AddDeclaration("ISolute", "NH4", new string[] { "[ScopedLinkByName]" });
                    }
                    if (originalCode.Contains("SoilNitrogen.urea"))
                    {
                        manager.Replace("Soil.SoilNitrogen.urea", "Urea.kgha");
                        manager.Replace("SoilNitrogen.urea", "Urea.kgha");
                        manager.AddDeclaration("ISolute", "Urea", new string[] { "[ScopedLinkByName]" });
                    }
                    if (originalCode.Contains("SoilNitrogen.PlantAvailableNO3"))
                    {
                        manager.Replace("Soil.SoilNitrogen.PlantAvailableNO3", "PlantAvailableNO3.kgha");
                        manager.Replace("SoilNitrogen.PlantAvailableNO3", "PlantAvailableNO3.kgha");
                        manager.AddDeclaration("ISolute", "PlantAvailableNO3", new string[] { "[ScopedLinkByName]" });
                    }
                    if (originalCode.Contains("SoilNitrogen.PlantAvailableNH4"))
                    {
                        manager.Replace("Soil.SoilNitrogen.PlantAvailableNH4", "PlantAvailableNH4.kgha");
                        manager.Replace("SoilNitrogen.PlantAvailableNH4", "PlantAvailableNH4.kgha");
                        manager.AddDeclaration("ISolute", "PlantAvailableNH4", new string[] { "[ScopedLinkByName]" });
                    }
                    if (originalCode != manager.ToString())
                    {
                        var usingLines = manager.GetUsingStatements().ToList();
                        usingLines.Add("Models.Interfaces");
                        manager.SetUsingStatements(usingLines);
                        manager.Save();
                    }
                }
            }

            foreach (var series in JsonUtilities.ChildrenOfType(root, "Series"))
            {
                if (series["XFieldName"] != null)
                {
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.NO3", "SoilNitrogen.NO3.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.NH4", "SoilNitrogen.NH4.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.urea", "SoilNitrogen.Urea.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNO3", "SoilNitrogen.PlantAvailableNO3.kgha");
                    series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNH4", "SoilNitrogen.PlantAvailableNH4.kgha");
                }
                if (series["YFieldName"] != null)
                {
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.NO3", "SoilNitrogen.NO3.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.NH4", "SoilNitrogen.NH4.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.urea", "SoilNitrogen.Urea.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNO3", "SoilNitrogen.PlantAvailableNO3.kgha");
                    series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNH4", "SoilNitrogen.PlantAvailableNH4.kgha");
                }
            }
        }