/// <inheritdoc/>
public override string ModelSummaryInnerClosingTags()
{
using (StringWriter htmlWriter = new StringWriter())
{
if (FormatForParentControl)
{
if (!(CurrentAncestorList.Count >= 3 && CurrentAncestorList[CurrentAncestorList.Count - 1] == typeof(RuminantInitialCohorts).Name))
{
RuminantType rumtype = FindAncestor <RuminantType>();
if (rumtype != null)
{
var newInd = Ruminant.Create(Sex, rumtype, Age);
string normWtString = newInd.NormalisedAnimalWeight.ToString("#,##0");
if (this.Weight != 0 && Math.Abs(this.Weight - newInd.NormalisedAnimalWeight) / newInd.NormalisedAnimalWeight > 0.2)
{
normWtString = "<span class=\"errorlink\">" + normWtString + "</span>";
(this.Parent as RuminantInitialCohorts).WeightWarningOccurred = true;
}
string weightstring = "";
if (this.Weight > 0)
{
weightstring = $"<span class=\"setvalue\">{this.Weight.ToString() + ((this.WeightSD > 0) ? " (" + this.WeightSD.ToString() + ")" : "")}</span>";
}
htmlWriter.Write($"\r\n<tr{(this.Enabled ? "" : " class=\"disabled\"")}><td>{this.Name}</td><td><span class=\"setvalue\">{this.Sex}</span></td><td><span class=\"setvalue\">{this.Age.ToString()}</span></td><td>{weightstring}</td><td>{normWtString}</td><td><span class=\"setvalue\">{this.Number.ToString()}</span></td><td{((this.Suckling) ? " class=\"fill\"" : "")}></td><td{((this.Sire) ? " class=\"fill\"" : "")}></td>");
if ((Parent as RuminantInitialCohorts).ConceptionsFound)
{
var setConceptionFound = this.FindChild <SetPreviousConception>();
if (setConceptionFound != null)
{
htmlWriter.Write($"<td class=\"fill\"><span class=\"setvalue\">{setConceptionFound.NumberMonthsPregnant}</span> mths</td>");
}
else
{
htmlWriter.Write("<td></td>");
}
}
if ((Parent as RuminantInitialCohorts).AttributesFound)
{
var setAttributesFound = this.FindAllChildren <SetAttributeWithValue>();
if (setAttributesFound.Any())
{
htmlWriter.Write($"<td class=\"fill\">");
foreach (var attribute in setAttributesFound)
{
htmlWriter.Write($"<span class=\"setvalue\">{attribute.AttributeName}</span> ");
}
htmlWriter.Write($"</td>");
}
else
{
htmlWriter.Write("<td></td>");
}
}
htmlWriter.Write("</tr>");
}
}
}
else
{
htmlWriter.Write("\r\n</div>");
}
return(htmlWriter.ToString());
}
}
/// <summary>
/// Create the individual ruminant animals using the Cohort parameterisations.
/// </summary>
/// <param name="number">The number of individuals to create</param>
/// <param name="initialAttributes">The initial attributes found from parent and this cohort</param>
/// <param name="ruminantType">The breed parameters if overwritten</param>
/// <returns>List of ruminants</returns>
public List <Ruminant> CreateIndividuals(int number, List <ISetAttribute> initialAttributes, RuminantType ruminantType = null)
{
List <Ruminant> individuals = new List <Ruminant>();
if (number > 0)
{
RuminantType parent = ruminantType;
if (parent is null)
{
parent = FindAncestor <RuminantType>();
}
// get Ruminant Herd resource for unique ids
RuminantHerd ruminantHerd = parent.Parent as RuminantHerd; // Resources.FindResourceGroup<RuminantHerd>();
for (int i = 1; i <= number; i++)
{
double weight = 0;
if (Weight > 0)
{
// avoid accidental small weight if SD provided but weight is 0
// if weight is 0 then the normalised weight will be applied in Ruminant constructor.
double u1 = RandomNumberGenerator.Generator.NextDouble();
double u2 = RandomNumberGenerator.Generator.NextDouble();
double randStdNormal = Math.Sqrt(-2.0 * Math.Log(u1)) *
Math.Sin(2.0 * Math.PI * u2);
weight = Weight + WeightSD * randStdNormal;
}
Ruminant ruminant = Ruminant.Create(Sex, parent, Age, weight);
ruminant.ID = ruminantHerd.NextUniqueID;
ruminant.Breed = parent.Breed;
ruminant.HerdName = parent.Name;
ruminant.SaleFlag = HerdChangeReason.None;
if (Suckling)
{
if (Age >= ((parent.NaturalWeaningAge == 0)?parent.GestationLength: parent.NaturalWeaningAge))
{
string limitstring = (parent.NaturalWeaningAge == 0) ? $"gestation length [{parent.GestationLength}]" : $"natural weaning age [{parent.NaturalWeaningAge}]";
string warn = $"Individuals older than {limitstring} cannot be assigned as suckling [r={parent.Name}][r={this.Parent.Name}][r={this.Name}]{Environment.NewLine}These individuals have not been assigned suckling.";
Warnings.CheckAndWrite(warn, Summary, this, MessageType.Warning);
}
else
{
ruminant.SetUnweaned();
}
}
if (Sire)
{
if (this.Sex == Sex.Male)
{
RuminantMale ruminantMale = ruminant as RuminantMale;
ruminantMale.Attributes.Add("Sire");
}
else
{
string warn = $"Breeding sire switch is not valid for individual females [r={parent.Name}][r={this.Parent.Name}][r={this.Name}]{Environment.NewLine}These individuals have not been assigned sires. Change Sex to Male to create sires in initial herd.";
Warnings.CheckAndWrite(warn, Summary, this, MessageType.Warning);
}
}
// if weight not provided use normalised weight
ruminant.PreviousWeight = ruminant.Weight;
if (this.Sex == Sex.Female)
{
RuminantFemale ruminantFemale = ruminant as RuminantFemale;
ruminantFemale.WeightAtConception = ruminant.Weight;
ruminantFemale.NumberOfBirths = 0;
if (setPreviousConception != null)
{
setPreviousConception.SetConceptionDetails(ruminantFemale);
}
}
// initialise attributes
foreach (ISetAttribute item in initialAttributes)
{
ruminant.Attributes.Add(item.AttributeName, item.GetAttribute(true));
}
individuals.Add(ruminant);
}
// add any mandatory attributes to the list on the ruminant type
foreach (var mattrib in initialAttributes.Where(a => a.Mandatory))
{
parent.AddMandatoryAttribute(mattrib.AttributeName);
}
}
return(individuals);
}
/// <inheritdoc/>
public override string ModelSummary()
{
RuminantType rumType;
bool specifyRuminantParent = false;
using (StringWriter htmlWriter = new StringWriter())
{
if (!FormatForParentControl)
{
rumType = FindAncestor <RuminantType>();
if (rumType is null)
{
// look for rum type in SpecifyRuminant
var specParent = this.FindAllAncestors <SpecifyRuminant>().FirstOrDefault();
if (specParent != null)
{
var resHolder = this.FindAncestor <ZoneCLEM>().FindDescendant <ResourcesHolder>();
rumType = resHolder.FindResourceType <RuminantHerd, RuminantType>(this, specParent.RuminantTypeName, OnMissingResourceActionTypes.Ignore, OnMissingResourceActionTypes.Ignore);
specifyRuminantParent = true;
}
}
htmlWriter.Write("\r\n<div class=\"activityentry\">");
if (!specifyRuminantParent & Number <= 0)
{
htmlWriter.Write("<span class=\"errorlink\">" + Number.ToString() + "</span> x ");
}
else if (!specifyRuminantParent & Number > 1)
{
htmlWriter.Write("<span class=\"setvalue\">" + Number.ToString() + "</span> x ");
}
else
{
htmlWriter.Write("A ");
}
htmlWriter.Write($"<span class=\"setvalue\">{Age}</span> month old ");
htmlWriter.Write("<span class=\"setvalue\">" + Sex.ToString() + "</span></div>");
if (Suckling)
{
htmlWriter.Write("\r\n<div class=\"activityentry\">" + ((Number > 1) ? "These individuals are suckling" : "This individual is a suckling") + "</div>");
}
if (Sire)
{
htmlWriter.Write("\r\n<div class=\"activityentry\">" + ((Number > 1) ? "These individuals are breeding sires" : "This individual is a breeding sire") + "</div>");
}
Ruminant newInd = null;
string normWtString = "Unavailable";
if (rumType != null)
{
newInd = Ruminant.Create(Sex, rumType, Age);
normWtString = newInd.NormalisedAnimalWeight.ToString("#,##0");
}
if (WeightSD > 0)
{
htmlWriter.Write("\r\n<div class=\"activityentry\">Individuals will be randomly assigned a weight based on a mean " + ((Weight == 0) ? "(using the normalised weight) " : "") + "of <span class=\"setvalue\">" + Weight.ToString("#,##0") + "</span> kg with a standard deviation of <span class=\"setvalue\">" + WeightSD.ToString() + "</span></div>");
if (newInd != null && Math.Abs(Weight - newInd.NormalisedAnimalWeight) / newInd.NormalisedAnimalWeight > 0.2)
{
htmlWriter.Write("<div class=\"activityentry\">These individuals should weigh close to the normalised weight of <span class=\"errorlink\">" + normWtString + "</span> kg for their age</div>");
}
}
else
{
htmlWriter.Write("\r\n<div class=\"activityentry\">" + ((Number > 1) ? "These individuals " : "This individual ") + "weigh" + ((Number > 1) ? "" : "s") + ((Weight == 0) ? " the normalised weight of " : "") + " <span class=\"setvalue\">" + Weight.ToString("#,##0") + "</span> kg");
if (newInd != null && Math.Abs(Weight - newInd.NormalisedAnimalWeight) / newInd.NormalisedAnimalWeight > 0.2)
{
htmlWriter.Write(", but should weigh close to the normalised weight of <span class=\"errorlink\">" + normWtString + "</span> kg for their age");
}
htmlWriter.Write("</div>");
}
}
else
{
if (this.Parent is CLEMActivityBase | this.Parent is SpecifyRuminant)
{
bool parentIsSpecify = (Parent is SpecifyRuminant);
// when formatted for parent control. i.e. child fo trade
htmlWriter.Write("\r\n<div class=\"resourcebanneralone clearfix\">");
if (!parentIsSpecify)
{
htmlWriter.Write("Buy ");
if (Number > 0)
{
htmlWriter.Write("<span class=\"setvalue\">");
htmlWriter.Write(Number.ToString());
}
else
{
htmlWriter.Write("<span class=\"errorlink\">");
htmlWriter.Write("NOT SET");
}
htmlWriter.Write("</span> x ");
}
if (Age > 0)
{
htmlWriter.Write("<span class=\"setvalue\">");
htmlWriter.Write(Age.ToString());
}
else
{
htmlWriter.Write("<span class=\"errorlink\">");
htmlWriter.Write("NOT SET");
}
htmlWriter.Write("</span> month old ");
htmlWriter.Write("<span class=\"setvalue\">");
htmlWriter.Write(Sex.ToString() + ((Number > 1 | parentIsSpecify) ? "s" : ""));
htmlWriter.Write("</span> weighing ");
if (Weight > 0)
{
htmlWriter.Write("<span class=\"setvalue\">");
htmlWriter.Write(Weight.ToString());
htmlWriter.Write("</span> kg ");
if (WeightSD > 0)
{
htmlWriter.Write("with a standard deviation of <span class=\"setvalue\">");
htmlWriter.Write(WeightSD.ToString());
htmlWriter.Write("</span>");
}
}
else
{
htmlWriter.Write("<span class=\"setvalue\">");
htmlWriter.Write("Normalised weight");
htmlWriter.Write("</span>");
}
if (Sire || Suckling)
{
htmlWriter.Write(" and ");
htmlWriter.Write(Sire ? "<span class=\"setvalue\">Sires</span>" : "");
if (Suckling)
{
htmlWriter.Write($"<span class=\"{(Sire ? "errorlink":"setvalue")}\">Suckling</span>");
}
}
htmlWriter.Write("\r\n</div>");
}
}
return(htmlWriter.ToString());
}
}
/// <summary>
/// Create the individual ruminant animals using the Cohort parameterisations.
/// </summary>
/// <param name="number">The number of individuals to create</param>
/// <param name="initialAttributes">The initial attributes found from parent and this cohort</param>
/// <param name="ruminantType">The breed parameters if overwritten</param>
/// <returns>List of ruminants</returns>
public List <Ruminant> CreateIndividuals(int number, List <ISetAttribute> initialAttributes, RuminantType ruminantType = null)
{
List <Ruminant> individuals = new List <Ruminant>();
if (number > 0)
{
RuminantType parent = ruminantType;
if (parent is null)
{
parent = FindAncestor <RuminantType>();
}
// get Ruminant Herd resource for unique ids
RuminantHerd ruminantHerd = parent.Parent as RuminantHerd; // Resources.FindResourceGroup<RuminantHerd>();
for (int i = 1; i <= number; i++)
{
double weight = 0;
if (Weight > 0)
{
// avoid accidental small weight if SD provided but weight is 0
// if weight is 0 then the normalised weight will be applied in Ruminant constructor.
double u1 = RandomNumberGenerator.Generator.NextDouble();
double u2 = RandomNumberGenerator.Generator.NextDouble();
double randStdNormal = Math.Sqrt(-2.0 * Math.Log(u1)) *
Math.Sin(2.0 * Math.PI * u2);
weight = Weight + WeightSD * randStdNormal;
}
Ruminant ruminant = Ruminant.Create(Sex, parent, Age, weight);
ruminant.ID = ruminantHerd.NextUniqueID;
ruminant.Breed = parent.Breed;
ruminant.HerdName = parent.Name;
ruminant.SaleFlag = HerdChangeReason.None;
if (Suckling)
{
ruminant.SetUnweaned();
}
if (Sire)
{
if (this.Sex == Sex.Male)
{
RuminantMale ruminantMale = ruminant as RuminantMale;
ruminantMale.Attributes.Add("Sire");
}
else
{
Summary.WriteWarning(this, "Breeding sire switch is not valid for individual females [r=" + parent.Name + "].[r=" + this.Parent.Name + "].[r=" + this.Name + "]");
}
}
// if weight not provided use normalised weight
ruminant.PreviousWeight = ruminant.Weight;
if (this.Sex == Sex.Female)
{
RuminantFemale ruminantFemale = ruminant as RuminantFemale;
ruminantFemale.WeightAtConception = ruminant.Weight;
ruminantFemale.NumberOfBirths = 0;
if (setPreviousConception != null)
{
setPreviousConception.SetConceptionDetails(ruminantFemale);
}
}
// initialise attributes
foreach (ISetAttribute item in initialAttributes)
{
ruminant.Attributes.Add(item.AttributeName, item.GetAttribute(true));
}
individuals.Add(ruminant);
}
// add any mandatory attributes to the list on the ruminant type
foreach (var mattrib in initialAttributes.Where(a => a.Mandatory))
{
parent.AddMandatoryAttribute(mattrib.AttributeName);
}
}
return(individuals);
}