public static Peptide Read(BinaryReader reader)
{
Peptide result = new Peptide();
result.sequence = AASequence.Read(reader);
if (result.sequence == null)
{
return(null);
}
result.monoIsotopicMass = reader.ReadDouble();
int nproteins = reader.ReadInt32();
for (int i = 0; i < nproteins; i++)
{
result.proteinIndices.Add(reader.ReadInt32());
result.proteinOffsets.Add(reader.ReadInt32());
result.residueBefore.Add(reader.ReadByte());
result.residueAfter.Add(reader.ReadByte());
}
result.fixedModifications = PeptideModificationState.Read(reader);
return(result);
}
public ModifiedPeptide(Peptide peptide, int peptideIndex)
{
this.peptideIndex = peptideIndex;
modifications = new PeptideModificationState(peptide.Sequence.Length);
mass = peptide.MonoIsotopicMass;
}