/// <summary>
/// Constructor for process tracker: Initialises the trackers for individual processes
/// </summary>
/// <param name="numTimesteps">The number of time steps in the model</param>
/// <param name="lats">The latitudes of active grid cells in the model</param>
/// <param name="lons">The longitudes of active grid cells in the model</param>
/// <param name="cellIndices">List of indices of active cells in the model grid</param>
/// <param name="Filenames">The filenames of the output files to write the tracking results to</param>
/// <param name="trackProcesses">Whether to track processes</param>
/// <param name="cohortDefinitions">The definitions for cohort functional groups in the model</param>
/// <param name="missingValue">The missing value to use in process tracking output files</param>
/// <param name="outputFileSuffix">The suffix to be applied to output files from process tracking</param>
/// <param name="outputPath">The path to the folder to be used for process tracking outputs</param>
/// <param name="trackerMassBins">The mass bins to use for categorising output data in the process trackers</param>
/// <param name="specificLocations">Whether the model is being run for specific locations</param>
/// <param name="cellIndex">The index of the current cell in the list of all cells to run the model for</param>
/// <param name="initialisation">The Madingley Model initialisation</param>
/// <param name="marineCell">Whether the current cell is a marine cell</param>
/// <param name="latCellSize">The size of grid cells in the latitudinal direction</param>
/// <param name="lonCellSize">The size of grid cells in the longitudinal direction</param>
public ProcessTracker(uint numTimesteps,
float[] lats, float[] lons,
List <uint[]> cellIndices,
SortedList <string, string> Filenames,
Boolean trackProcesses,
FunctionalGroupDefinitions cohortDefinitions,
double missingValue,
string outputFileSuffix,
string outputPath, MassBinsHandler trackerMassBins,
Boolean specificLocations,
int cellIndex,
MadingleyModelInitialisation initialisation,
bool marineCell,
float latCellSize,
float lonCellSize)
{
// Initialise trackers for ecological processes
_TrackProcesses = trackProcesses;
if (_TrackProcesses)
{
_TrackReproduction = new ReproductionTracker(numTimesteps, (uint)lats.Length, (uint)lons.Length, cellIndices, Filenames["NewCohortsOutput"], Filenames["MaturityOutput"], outputFileSuffix, outputPath, cellIndex);
_TrackEating = new EatingTracker((uint)lats.Length, (uint)lons.Length, Filenames["TrophicFlowsOutput"], outputFileSuffix, outputPath, cellIndex, initialisation, marineCell);
_TrackGrowth = new GrowthTracker(numTimesteps, (uint)lats.Length, (uint)lons.Length, cellIndices, Filenames["GrowthOutput"], outputFileSuffix, outputPath, cellIndex);
_TrackMortality = new MortalityTracker(numTimesteps, (uint)lats.Length, (uint)lons.Length, cellIndices, Filenames["MortalityOutput"], outputFileSuffix, outputPath, cellIndex);
_TrackExtinction = new ExtinctionTracker(Filenames["ExtinctionOutput"], outputPath, outputFileSuffix, cellIndex);
_TrackMetabolism = new MetabolismTracker(Filenames["MetabolismOutput"], outputPath, outputFileSuffix, cellIndex);
// Initialise the predation and herbivory trackers only for runs with specific locations
if (specificLocations == true)
{
_TrackPredation = new PredationTracker(numTimesteps, cellIndices, Filenames["PredationFlowsOutput"], cohortDefinitions,
missingValue, outputFileSuffix, outputPath, trackerMassBins, cellIndex);
}
}
}
/// <summary>
/// Constructor for process tracker: Initialises the trackers for individual processes
/// </summary>
/// <param name="numTimesteps">The number of time steps in the model</param>
/// <param name="lats">The latitudes of active grid cells in the model</param>
/// <param name="lons">The longitudes of active grid cells in the model</param>
/// <param name="cellIndices">List of indices of active cells in the model grid</param>
/// <param name="Filenames">The filenames of the output files to write the tracking results to</param>
/// <param name="trackProcesses">Whether to track processes</param>
/// <param name="cohortDefinitions">The definitions for cohort functional groups in the model</param>
/// <param name="missingValue">The missing value to use in process tracking output files</param>
/// <param name="outputFileSuffix">The suffix to be applied to output files from process tracking</param>
/// <param name="outputPath">The path to the folder to be used for process tracking outputs</param>
/// <param name="trackerMassBins">The mass bins to use for categorising output data in the process trackers</param>
/// <param name="specificLocations">Whether the model is being run for specific locations</param>
/// <param name="cellIndex">The index of the current cell in the list of all cells to run the model for</param>
/// <param name="initialisation">The Madingley Model initialisation</param>
/// <param name="marineCell">Whether the current cell is a marine cell</param>
/// <param name="latCellSize">The size of grid cells in the latitudinal direction</param>
/// <param name="lonCellSize">The size of grid cells in the longitudinal direction</param>
public ProcessTracker(uint numTimesteps,
float[] lats, float[] lons,
List<uint[]> cellIndices,
SortedList<string, string> Filenames,
Boolean trackProcesses,
FunctionalGroupDefinitions cohortDefinitions,
double missingValue,
string outputFileSuffix,
string outputPath, MassBinsHandler trackerMassBins,
Boolean specificLocations,
int cellIndex,
MadingleyModelInitialisation initialisation,
bool marineCell,
float latCellSize,
float lonCellSize)
{
// Initialise trackers for ecological processes
_TrackProcesses = trackProcesses;
if (_TrackProcesses)
{
_TrackReproduction = new ReproductionTracker(numTimesteps, (uint)lats.Length, (uint)lons.Length, cellIndices, Filenames["NewCohortsOutput"], Filenames["MaturityOutput"], outputFileSuffix, outputPath, cellIndex);
_TrackEating = new EatingTracker((uint)lats.Length, (uint)lons.Length, Filenames["TrophicFlowsOutput"], outputFileSuffix, outputPath, cellIndex, initialisation, marineCell);
_TrackGrowth = new GrowthTracker(numTimesteps, (uint)lats.Length, (uint)lons.Length, cellIndices, Filenames["GrowthOutput"], outputFileSuffix, outputPath, cellIndex);
_TrackMortality = new MortalityTracker(numTimesteps, (uint)lats.Length, (uint)lons.Length, cellIndices, Filenames["MortalityOutput"], outputFileSuffix, outputPath, cellIndex);
_TrackExtinction = new ExtinctionTracker(Filenames["ExtinctionOutput"], outputPath, outputFileSuffix, cellIndex);
_TrackMetabolism = new MetabolismTracker(Filenames["MetabolismOutput"], outputPath, outputFileSuffix, cellIndex);
// Initialise the predation and herbivory trackers only for runs with specific locations
if (specificLocations == true)
{
_TrackPredation = new PredationTracker(numTimesteps, cellIndices, Filenames["PredationFlowsOutput"], cohortDefinitions,
missingValue, outputFileSuffix, outputPath, trackerMassBins, cellIndex);
}
}
}