//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
InputParameterParser.EcoregionsDataset = Model.Core.Ecoregions;
InputParameterParser parser = new InputParameterParser();
IInputParameters parameters = Data.Load <IInputParameters>(dataFile, parser);
Timestep = parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
srdMapNames = parameters.SRDMapNames;
nrdMapNames = parameters.NRDMapNames;
cohorts = Model.Core.SuccessionCohorts as ILandscapeCohorts;
if (cohorts == null)
{
throw new ApplicationException("Error: Cohorts don't support age-cohort interface");
}
SiteVars.Initialize(cohorts);
manyAgentParameters = parameters.ManyAgentParameters;
foreach (IAgent activeAgent in manyAgentParameters)
// UI.WriteLine("Parameters did not load successfully.");
{
//foreach (ISpecies spp in Model.Species)
// UI.WriteLine("Spp={0}, MinorHostAge={1}.", spp.Name, activeAgent.SppParameters[spp.Index].SecondaryHostAge);
if (activeAgent == null)
{
UI.WriteLine("Agent Parameters NOT loading correctly.");
}
//UI.WriteLine("Name of Agent = {0}", activeAgent.AgentName);
activeAgent.TimeToNextEpidemic = TimeToNext(activeAgent, Timestep);
int i = 0;
activeAgent.DispersalNeighbors
= GetDispersalNeighborhood(activeAgent, Timestep);
if (activeAgent.DispersalNeighbors != null)
{
foreach (RelativeLocation reloc in activeAgent.DispersalNeighbors)
{
i++;
}
UI.WriteLine("Dispersal Neighborhood = {0} neighbors.", i);
}
i = 0;
activeAgent.ResourceNeighbors = GetResourceNeighborhood(activeAgent);
if (activeAgent.ResourceNeighbors != null)
{
foreach (RelativeLocationWeighted reloc in activeAgent.ResourceNeighbors)
{
i++;
}
UI.WriteLine("Resource Neighborhood = {0} neighbors.", i);
}
}
string logFileName = parameters.LogFileName;
UI.WriteLine("Opening BDA log file \"{0}\" ...", logFileName);
log = Data.CreateTextFile(logFileName);
log.AutoFlush = true;
log.Write("CurrentTime, ROS, NumCohortsKilled, NumSitesDamaged, MeanSeverity");
log.WriteLine("");
}
public void InitializePhase2() //InitializePhase2
{
SiteVars.InitializeTimeOfLastDisturbances();
}