public AlignmentProtocolCollection(MatrixViewModel owner)
{
Owner = owner;
HorizontalProtocols = new List<AlignmentProtocol>();
VerticalProtocols = new List<AlignmentProtocol>();
}
// <summary> Gets or sets whether each box is rounded to smallest enclosing rectangle (false) or whether the polygon shape of the box is used for fitting matrix elements. </summary>
//public bool ConsiderPolygonShapes { get; set; }
//constructor
/// <summary> Creates a new arranger specifying the relative positions of the boxes constituting the matrix.
/// Initially, there are zero rows and columns, since this ctor is called before the boxes collection is populated. </summary>
/// <param name="boxes"> The boxes in the matrix. </param>
public MatrixView(MatrixViewModel viewModel, IReadOnlyList<ILayout> boxes)
: base(boxes)
{
this.viewModel = viewModel;
}
