public void TestMzmlExport()
{
VoltageAccumulationWorkflow workflow = new VoltageAccumulationWorkflow(true, F1E, "output");
workflow.RunVoltageAccumulationWorkflow(FileFormatEnum.MzML);
workflow.RunVoltageAccumulationWorkflow(FileFormatEnum.UIMF);
}
/// <summary>
/// The execute converter.
/// </summary>
/// <param name="options">
/// The options.
/// </param>
/// <returns>
/// The <see cref="int"/>.
/// </returns>
/// <exception cref="Exception">
/// </exception>
private static int ExecuteConverter(ConverterOptions options)
{
string inputPath = options.InputPath;
string outputPath = options.OutputPath;
string tubeLength = options.TubeLength;
string inputExtension = Path.GetExtension(inputPath).ToLower();
string conversionType = options.ConversionType.ToLower();
string outputExtension = Path.GetExtension(outputPath).ToLower();
if (inputExtension == ".uimf")
{
if (conversionType == "uimf")
{
VoltageAccumulationWorkflow workflow = new VoltageAccumulationWorkflow(false, inputPath, outputPath);
return Convert.ToInt32(workflow.RunVoltageAccumulationWorkflow(FileFormatEnum.UIMF));
}
else if (conversionType == "mzml")
{
VoltageAccumulationWorkflow workflow = new VoltageAccumulationWorkflow(false, inputPath, outputPath);
return Convert.ToInt32(workflow.RunVoltageAccumulationWorkflow(FileFormatEnum.MzML));
}
else
{
throw new Exception("Output type " + inputExtension.ToLower() + " not supported");
}
}
else if (inputExtension == ".d")
{
if (outputExtension == "uimf" || conversionType == "uimf")
{
if (outputExtension != "uimf")
{
DirectoryInfo info = new DirectoryInfo(inputPath);
string fileName = info.Name.Replace(".d", "");
}
Task conversion = AgilentToUimfConversion.ConvertToUimf(inputPath, outputPath, tubeLength);
conversion.Wait();
}
else
{
throw new Exception("Output type " + inputExtension.ToLower() + " not supported");
}
}
else
{
throw new Exception("Input type " + inputExtension.ToLower() + " not supported");
}
return 0;
}
