public IDPickerForm (IList<string> args)
{
InitializeComponent();
toolStripStatusLabel.Text = "Initializing...";
Thread.CurrentThread.Priority = ThreadPriority.AboveNormal;
this.args = args;
defaultDataFilter = new DataFilter();
manager = new Manager(dockPanel)
{
ShowChromatogramListForNewSources = false,
ShowSpectrumListForNewSources = false,
OpenFileUsesCurrentGraphForm = true,
};
progressMonitor = new ProgressMonitor();
progressMonitor.ProgressUpdate += progressMonitor_ProgressUpdate;
if (Program.IsHeadless)
Load += IDPickerForm_Load;
else
Shown += IDPickerForm_Load;
basicFilterControl = new BasicFilterControl();
basicFilterControl.BasicFilterChanged += basicFilterControl_BasicFilterChanged;
basicFilterControl.ApplyFilterChanges += basicFilterControl_ApplyFilterChanges;
basicFilterControl.ShowQonverterSettings += ShowQonverterSettings;
dataFilterPopup = new Popup(basicFilterControl) { FocusOnOpen = true };
dataFilterPopup.Closed += dataFilterPopup_Closed;
breadCrumbControl = new BreadCrumbControl() { Dock = DockStyle.Fill };
breadCrumbControl.BreadCrumbClicked += breadCrumbControl_BreadCrumbClicked;
breadCrumbPanel.Controls.Add(breadCrumbControl);
fragmentationStatisticsForm = new FragmentationStatisticsForm(this);
fragmentationStatisticsForm.Show(dockPanel, DockState.DockBottomAutoHide);
fragmentationStatisticsForm.AutoHidePortion = 0.5;
peakStatisticsForm = new PeakStatisticsForm(this);
peakStatisticsForm.Show(dockPanel, DockState.DockBottomAutoHide);
peakStatisticsForm.AutoHidePortion = 0.5;
distributionStatisticsForm = new DistributionStatisticsForm(this);
distributionStatisticsForm.Show(dockPanel, DockState.DockBottomAutoHide);
distributionStatisticsForm.AutoHidePortion = 0.5;
reassignPSMsForm = new RescuePSMsForm(this);
reassignPSMsForm.Show(dockPanel, DockState.DockBottomAutoHide);
reassignPSMsForm.AutoHidePortion = 0.5;
ptmAttestationForm = new PTMAttestationForm(this);
ptmAttestationForm.Show(dockPanel, DockState.DockBottomAutoHide);
ptmAttestationForm.AutoHidePortion = 0.5;
spectrumTableForm = new SpectrumTableForm();
spectrumTableForm.Show(dockPanel, DockState.DockLeft);
spectrumTableForm.AutoHidePortion = 0.5;
proteinTableForm = new ProteinTableForm();
proteinTableForm.Show(dockPanel, DockState.DockTop);
proteinTableForm.AutoHidePortion = 0.5;
peptideTableForm = new PeptideTableForm();
peptideTableForm.Show(dockPanel, DockState.DockTop);
peptideTableForm.AutoHidePortion = 0.5;
proteinTableForm.Activate();
modificationTableForm = new ModificationTableForm();
modificationTableForm.Show(dockPanel, DockState.Document);
modificationTableForm.AutoHidePortion = 0.5;
analysisTableForm = new AnalysisTableForm();
analysisTableForm.Show(dockPanel, DockState.Document);
analysisTableForm.AutoHidePortion = 0.5;
filterHistoryForm = new FilterHistoryForm();
filterHistoryForm.Show(dockPanel, DockState.Document);
filterHistoryForm.AutoHidePortion = 0.5;
spectrumTableForm.SpectrumViewFilter += handleViewFilter;
spectrumTableForm.SpectrumViewVisualize += spectrumTableForm_SpectrumViewVisualize;
spectrumTableForm.FinishedSetData += handleFinishedSetData;
spectrumTableForm.StartingSetData += handleStartingSetData;
proteinTableForm.ProteinViewFilter += handleViewFilter;
proteinTableForm.ProteinViewVisualize += proteinTableForm_ProteinViewVisualize;
proteinTableForm.FinishedSetData += handleFinishedSetData;
proteinTableForm.StartingSetData += handleStartingSetData;
peptideTableForm.PeptideViewFilter += handleViewFilter;
peptideTableForm.FinishedSetData += handleFinishedSetData;
peptideTableForm.StartingSetData += handleStartingSetData;
modificationTableForm.ModificationViewFilter += handleViewFilter;
modificationTableForm.FinishedSetData += handleFinishedSetData;
modificationTableForm.StartingSetData += handleStartingSetData;
analysisTableForm.AnalysisViewFilter += handleViewFilter;
analysisTableForm.FinishedSetData += handleFinishedSetData;
analysisTableForm.StartingSetData += handleStartingSetData;
filterHistoryForm.LoadPersistentDataFilter += handleLoadPersistentDataFilter;
//filterHistoryForm.FinishedSetData += handleFinishedSetData;
//filterHistoryForm.StartingSetData += handleStartingSetData;
// hide DockPanel before initializing layout manager
dockPanel.Visible = false;
dockPanel.ShowDocumentIcon = true;
persistentForms = new IPersistentForm[]
{
proteinTableForm,
peptideTableForm,
spectrumTableForm,
analysisTableForm,
filterHistoryForm
};
_layoutManager = new LayoutManager(this, dockPanel, persistentForms);
// load last or default location and size
_layoutManager.LoadMainFormSettings();
// certain features are only enabled for development builds
if (Application.ExecutablePath.Contains("build-nt-x86"))
{
// provide SQL logging for development builds
logForm = new LogForm();
logForm.AutoHidePortion = 0.25;
Console.SetOut(logForm.LogWriter);
developerToolStripMenuItem.ForeColor = SystemColors.MenuBar;
}
else
{
Console.SetOut(TextWriter.Null);
developerToolStripMenuItem.Visible = false;
}
/*spyEventLogForm = new SpyEventLogForm();
spyEventLogForm.AddEventSpy(new EventSpy("proteinTableForm", proteinTableForm));
spyEventLogForm.AddEventSpy(new EventSpy("peptideTableForm", peptideTableForm));
spyEventLogForm.AddEventSpy(new EventSpy("spectrumTableForm", spectrumTableForm));
spyEventLogForm.AddEventSpy(new EventSpy("modificationTableForm", modificationTableForm));
spyEventLogForm.Show(dockPanel, DockState.DockBottomAutoHide);*/
}
public SpectrumViewVisualizeEventArgs (NHibernate.ISession session, SpectrumTableForm.PeptideSpectrumMatchRow row)
{
PeptideSpectrumMatchId = row.PeptideSpectrumMatchId;
Spectrum = row.Spectrum;
SpectrumSource = row.Source;
Analysis = row.Analysis;
Charge = row.Charge;
lock (session)
{
var psm = session.Load<PeptideSpectrumMatch>(PeptideSpectrumMatchId);
ModifiedSequence = psm.ToModifiedString(5);
session.Evict(psm);
}
}
