public void SetData(NHibernate.ISession session, DataModel.Protein protein, DataFilter viewFilter)
{
if (session == null)
{
return;
}
this.session = session.SessionFactory.OpenSession();
this.viewFilter = viewFilter;
var workerThread = new BackgroundWorker()
{
WorkerReportsProgress = true,
WorkerSupportsCancellation = true
};
workerThread.DoWork += setData;
if (protein == Protein)
{
workerThread.RunWorkerCompleted += refreshFilter;
}
else
{
workerThread.RunWorkerCompleted += renderData;
}
workerThread.RunWorkerAsync(protein);
}
public SequenceCoverageControl(NHibernate.ISession session, DataModel.Protein protein, DataFilter viewFilter)
{
ResizeRedraw = true;
DoubleBuffered = true;
AutoScroll = true;
ResidueGroupSize = 10;
lineSpacing = 3;
HeaderColor = Color.FromKnownColor(KnownColor.WindowText);
OffsetColor = Color.FromKnownColor(KnownColor.GrayText);
CoveredSequenceColor = Color.FromKnownColor(KnownColor.WindowText);
UncoveredSequenceColor = Color.FromKnownColor(KnownColor.GrayText);
HoverSequenceColor = Color.FromKnownColor(KnownColor.HotTrack);
ModifiedSequenceColor = Color.Red;
HeaderFont = new Font(new FontFamily(GenericFontFamilies.Monospace), 12);
OffsetFont = new Font(new FontFamily(GenericFontFamilies.Monospace), 12);
SequenceFont = new Font(new FontFamily(GenericFontFamilies.Monospace), 12);
FilteredInSequenceFont = new Font(SequenceFont, FontStyle.Bold);
HoverFont = new Font(SequenceFont, FontStyle.Bold | FontStyle.Underline);
SetData(session, protein, viewFilter);
ContextMenuStrip = new ContextMenuStrip();
ContextMenuStrip.Items.Add("Save image", null, (s, e) => bitmapSave());
ContextMenuStrip.Items.Add("Copy image", null, (s, e) => bitmapCopyToClipboard());
ContextMenuStrip.Items.Add("Copy sequence", null, (s, e) => sequenceCopyToClipboard());
}
public void Add(Protein pro)
{
insertRow(Table.Protein, new object[] { pro.Id, pro.Accession, pro.Length });
insertRow(Table.ProteinMetadata, new object[] { pro.Id, pro.Description });
insertRow(Table.ProteinData, new object[] { pro.Id, pro.Sequence });
long length = pro.Sequence != null ? pro.Sequence.Length : 0;
for (long i = currentMaxSequenceLength + 1; i <= length; ++i)
{
insertRow(Table.IntegerSet, new object[] { i });
}
currentMaxSequenceLength = Math.Max(length, currentMaxSequenceLength);
}
public SequenceCoverageForm(NHibernate.ISession session, DataModel.Protein protein, DataFilter viewFilter)
{
StartPosition = FormStartPosition.CenterParent;
ShowIcon = false;
WindowState = FormWindowState.Maximized;
Text = protein.Accession;
ResizeRedraw = true;
DoubleBuffered = true;
BackColor = SystemColors.Window;
control = new SequenceCoverageControl(session, protein, viewFilter)
{
Dock = DockStyle.Fill,
BackColor = this.BackColor
};
control.SequenceCoverageFilter += (s, e) => OnSequenceCoverageFilter(e);
Controls.Add(control);
}
public void SetData(NHibernate.ISession session, DataModel.Protein protein, DataFilter viewFilter)
{
Text = protein.Accession;
control.SetData(session, protein, viewFilter);
}
