public static void SerializeCode(Hl7.Fhir.Model.Code value, IFhirWriter writer, bool summary)
{
writer.WriteStartComplexContent();
// Serialize element value
if (value.Value != null)
{
writer.WritePrimitiveContents("value", value, XmlSerializationHint.Attribute);
}
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
writer.WriteEndComplexContent();
}
private static Profile.ProfileStructureComponent locate(Profile profile, string anchor, Code type)
{
if(String.IsNullOrEmpty(anchor)) anchor = null;
IEnumerable<Profile.ProfileStructureComponent> results = null;
if (anchor == null && type == null)
{
// We have NO structure name and NO type hint. This is only unambiguous if there's just 1 structure in the profile
results = profile.Structure;
}
else if(anchor != null && type == null)
{
// We have a structure name but NO specific type. This is normally unambiguous, since the name should be unique
results = profile.Structure.Where(str => str.Name == anchor);
}
else if (anchor == null && type != null)
{
// We don't know the structure name but have it's type. This is unambiguous if there's just one structure of the given type
results = profile.Structure.Where(str => str.Type == type.Value);
}
else
{
// We have both the name and the type, this should also normally be unique
results = profile.Structure.Where(str => str.Name == anchor && str.Type == type.Value);
}
if (results.Count() <= 1)
return results.SingleOrDefault();
else
throw Error.InvalidOperation("Cannot unambiguously determine structure to locate based on the given combination of url, anchor and structure type");
}
/// <summary>
/// Parse code
/// </summary>
public static Hl7.Fhir.Model.Code ParseCode(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.Code existingInstance = null)
{
Hl7.Fhir.Model.Code result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.Code();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element value
else if (atName == "value")
{
result.Value = Code.Parse(reader.ReadPrimitiveContents(typeof(Code))).Value;
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}
/// <summary>
/// Locate a structures within a profile given by an uri
/// </summary>
/// <param name="structureUri">An Uri pointing to a profile or a structure within a profile</param>
/// <param name="type">Resource or Datatype that the structure is constraining</param>
/// <returns>The structure as indicated by the uri or null if it was not found</returns>
/// <remarks>This function accepts an uri that has only the profile's address, or a uri that has both the
/// address and an achor indicating the name of the structure to locate (e.g. http://someplace.org/fhir/Profiles/myprofile#somestructure).
/// </remarks>
public Profile.ProfileStructureComponent Locate(Uri structureUri, Code type = null)
{
if (structureUri == null) throw Error.ArgumentNull("structureUri");
if (!structureUri.IsAbsoluteUri) throw Error.Argument("Reference to structure must be an absolute url");
// The structure Uri might be of the form <url-to-profile>#<structure name>
// First split off the <url-to-profile> and load the profile
var uriWithoutAnchor = new UriBuilder(structureUri);
uriWithoutAnchor.Fragment = null;
var profile = loadProfile(uriWithoutAnchor.Uri);
// If the profile was not found, return without doing work
if (profile == null || profile.Structure == null || profile.Structure.Count == 0) return null;
// Determine the anchor, which we use to locate the structure by comparing it to Structure.name
var anchor = structureUri.Fragment.TrimStart('#');
return locate(profile, anchor, type);
}
public void Write(Definition definition, Code code)
{
if (code != null)
{
Write(definition, code.Value);
}
}
private static ElementNavigator resolveStructureReference(StructureLoader loader, Code code)
{
var result = loader.LocateBaseStructure(code);
return result != null ? new ElementNavigator(result) : null;
}
public void ExtensionManagement()
{
Patient p = new Patient();
var u1 = "http://fhir.org/ext/ext-test";
Assert.IsNull(p.GetExtension("http://fhir.org/ext/ext-test"));
Extension newEx = p.SetExtension(u1, new FhirBoolean(true));
Assert.AreSame(newEx, p.GetExtension(u1));
p.AddExtension("http://fhir.org/ext/ext-test2", new FhirString("Ewout"));
Assert.AreSame(newEx, p.GetExtension(u1));
p.RemoveExtension(u1);
Assert.IsNull(p.GetExtension(u1));
p.SetExtension("http://fhir.org/ext/ext-test2", new FhirString("Ewout Kramer"));
var ew = p.GetExtensions("http://fhir.org/ext/ext-test2");
Assert.AreEqual(1, ew.Count());
p.AddExtension("http://fhir.org/ext/ext-test2", new FhirString("Wouter Kramer"));
ew = p.GetExtensions("http://fhir.org/ext/ext-test2");
Assert.AreEqual(2, ew.Count());
Assert.AreEqual(0, p.ModifierExtension.Count());
var me = p.AddExtension("http://fhir.org/ext/ext-test3", new FhirString("bla"), isModifier:true);
Assert.AreEqual(1, p.ModifierExtension.Count());
Assert.AreEqual(me, p.GetExtension("http://fhir.org/ext/ext-test3"));
Assert.AreEqual(me, p.GetExtensions("http://fhir.org/ext/ext-test3").Single());
Assert.AreEqual(3, p.AllExtensions().Count());
var code = new Code("test");
p.AddExtension("http://fhir.org/ext/code", code);
Assert.AreEqual(code, p.GetExtensionValue<Code>("http://fhir.org/ext/code"));
var text = new FhirString("test");
p.AddExtension("http://fhir.org/ext/string", text);
Assert.AreEqual(text, p.GetExtensionValue<FhirString>("http://fhir.org/ext/string"));
var fhirbool = new FhirBoolean(true);
p.AddExtension("http://fhir.org/ext/bool", fhirbool);
Assert.AreEqual(fhirbool, p.GetExtensionValue<FhirBoolean>("http://fhir.org/ext/bool"));
}
public void CodedEnumMapTest()
{
var input = new Code<AdministrativeGender>(AdministrativeGender.Male);
var result = sut.Map(input);
Assert.AreEqual(1, result.Count());
Assert.IsInstanceOfType(result[0], typeof(StringValue));
Assert.AreEqual("male", (result[0] as StringValue).Value);
}
public void CodeMapTest()
{
var input = new Code("bla");
var result = sut.Map(input);
Assert.AreEqual(1, result.Count());
Assert.IsInstanceOfType(result[0], typeof(StringValue));
Assert.AreEqual("bla", (result[0] as StringValue).Value);
}
private List <Expression> ToExpressions(FhirModel.Code element)
{
return(element != null?ListOf(new StringValue(element.Value)) : null);
}
/// <summary>
/// Locate base structures for a given FHIR core type
/// </summary>
/// <param name="type">The Resource or Datatype to locate</param>
/// <returns></returns>
public Profile.ProfileStructureComponent LocateBaseStructure(Code type)
{
return Locate(BuildBaseStructureUri(type),type);
}
/// <summary>
/// All base structures (resources + datatypes) that come with the spec have a specific pre-defined
/// (but currently symbolic) url where they can be found. This function constructs this Url, given the
/// core Resource or Datatype code.
/// </summary>
/// <param name="type">Resource or Datatype to build the Uri for</param>
/// <returns></returns>
public static Uri BuildBaseStructureUri(Code type)
{
//string fullReference = CoreZipArtifactSource.CORE_SPEC_PROFILE_URI_PREFIX + type.Value.ToLower();
string fullReference = CoreZipArtifactSource.CORE_SPEC_PROFILE_URI_PREFIX + type.Value;
return new Uri(fullReference);
}
public override IDeepCopyable CopyTo(IDeepCopyable other)
{
var dest = other as DiagnosticReport;
if (dest != null)
{
base.CopyTo(dest);
if (Identifier != null)
{
dest.Identifier = new List <Hl7.Fhir.Model.Identifier>(Identifier.DeepCopy());
}
if (StatusElement != null)
{
dest.StatusElement = (Code <Hl7.Fhir.Model.DiagnosticReport.DiagnosticReportStatus>)StatusElement.DeepCopy();
}
if (Category != null)
{
dest.Category = (Hl7.Fhir.Model.CodeableConcept)Category.DeepCopy();
}
if (Code != null)
{
dest.Code = (Hl7.Fhir.Model.CodeableConcept)Code.DeepCopy();
}
if (Subject != null)
{
dest.Subject = (Hl7.Fhir.Model.ResourceReference)Subject.DeepCopy();
}
if (Encounter != null)
{
dest.Encounter = (Hl7.Fhir.Model.ResourceReference)Encounter.DeepCopy();
}
if (Effective != null)
{
dest.Effective = (Hl7.Fhir.Model.Element)Effective.DeepCopy();
}
if (IssuedElement != null)
{
dest.IssuedElement = (Hl7.Fhir.Model.Instant)IssuedElement.DeepCopy();
}
if (Performer != null)
{
dest.Performer = (Hl7.Fhir.Model.ResourceReference)Performer.DeepCopy();
}
if (Request != null)
{
dest.Request = new List <Hl7.Fhir.Model.ResourceReference>(Request.DeepCopy());
}
if (Specimen != null)
{
dest.Specimen = new List <Hl7.Fhir.Model.ResourceReference>(Specimen.DeepCopy());
}
if (Result != null)
{
dest.Result = new List <Hl7.Fhir.Model.ResourceReference>(Result.DeepCopy());
}
if (ImagingStudy != null)
{
dest.ImagingStudy = new List <Hl7.Fhir.Model.ResourceReference>(ImagingStudy.DeepCopy());
}
if (Image != null)
{
dest.Image = new List <Hl7.Fhir.Model.DiagnosticReport.ImageComponent>(Image.DeepCopy());
}
if (ConclusionElement != null)
{
dest.ConclusionElement = (Hl7.Fhir.Model.FhirString)ConclusionElement.DeepCopy();
}
if (CodedDiagnosis != null)
{
dest.CodedDiagnosis = new List <Hl7.Fhir.Model.CodeableConcept>(CodedDiagnosis.DeepCopy());
}
if (PresentedForm != null)
{
dest.PresentedForm = new List <Hl7.Fhir.Model.Attachment>(PresentedForm.DeepCopy());
}
return(dest);
}
else
{
throw new ArgumentException("Can only copy to an object of the same type", "other");
}
}
public override IDeepCopyable CopyTo(IDeepCopyable other)
{
var dest = other as Condition;
if (dest == null)
{
throw new ArgumentException("Can only copy to an object of the same type", "other");
}
base.CopyTo(dest);
if (Identifier != null)
{
dest.Identifier = new List <Hl7.Fhir.Model.Identifier>(Identifier.DeepCopy());
}
if (ClinicalStatusElement != null)
{
dest.ClinicalStatusElement = (Code <Hl7.Fhir.Model.Condition.ConditionClinicalStatusCodes>)ClinicalStatusElement.DeepCopy();
}
if (VerificationStatusElement != null)
{
dest.VerificationStatusElement = (Code <Hl7.Fhir.Model.Condition.ConditionVerificationStatus>)VerificationStatusElement.DeepCopy();
}
if (Category != null)
{
dest.Category = new List <Hl7.Fhir.Model.CodeableConcept>(Category.DeepCopy());
}
if (Severity != null)
{
dest.Severity = (Hl7.Fhir.Model.CodeableConcept)Severity.DeepCopy();
}
if (Code != null)
{
dest.Code = (Hl7.Fhir.Model.CodeableConcept)Code.DeepCopy();
}
if (BodySite != null)
{
dest.BodySite = new List <Hl7.Fhir.Model.CodeableConcept>(BodySite.DeepCopy());
}
if (Subject != null)
{
dest.Subject = (Hl7.Fhir.Model.ResourceReference)Subject.DeepCopy();
}
if (Context != null)
{
dest.Context = (Hl7.Fhir.Model.ResourceReference)Context.DeepCopy();
}
if (Onset != null)
{
dest.Onset = (Hl7.Fhir.Model.DataType)Onset.DeepCopy();
}
if (Abatement != null)
{
dest.Abatement = (Hl7.Fhir.Model.DataType)Abatement.DeepCopy();
}
if (AssertedDateElement != null)
{
dest.AssertedDateElement = (Hl7.Fhir.Model.FhirDateTime)AssertedDateElement.DeepCopy();
}
if (Asserter != null)
{
dest.Asserter = (Hl7.Fhir.Model.ResourceReference)Asserter.DeepCopy();
}
if (Stage != null)
{
dest.Stage = (Hl7.Fhir.Model.Condition.StageComponent)Stage.DeepCopy();
}
if (Evidence != null)
{
dest.Evidence = new List <Hl7.Fhir.Model.Condition.EvidenceComponent>(Evidence.DeepCopy());
}
if (Note != null)
{
dest.Note = new List <Hl7.Fhir.Model.Annotation>(Note.DeepCopy());
}
return(dest);
}
public override IDeepCopyable CopyTo(IDeepCopyable other)
{
var dest = other as Procedure;
if (dest != null)
{
base.CopyTo(dest);
if (Identifier != null)
{
dest.Identifier = new List <Hl7.Fhir.Model.Identifier>(Identifier.DeepCopy());
}
if (Subject != null)
{
dest.Subject = (Hl7.Fhir.Model.ResourceReference)Subject.DeepCopy();
}
if (StatusElement != null)
{
dest.StatusElement = (Code <Hl7.Fhir.Model.Procedure.ProcedureStatus>)StatusElement.DeepCopy();
}
if (Category != null)
{
dest.Category = (Hl7.Fhir.Model.CodeableConcept)Category.DeepCopy();
}
if (Code != null)
{
dest.Code = (Hl7.Fhir.Model.CodeableConcept)Code.DeepCopy();
}
if (NotPerformedElement != null)
{
dest.NotPerformedElement = (Hl7.Fhir.Model.FhirBoolean)NotPerformedElement.DeepCopy();
}
if (ReasonNotPerformed != null)
{
dest.ReasonNotPerformed = new List <Hl7.Fhir.Model.CodeableConcept>(ReasonNotPerformed.DeepCopy());
}
if (BodySite != null)
{
dest.BodySite = new List <Hl7.Fhir.Model.CodeableConcept>(BodySite.DeepCopy());
}
if (Reason != null)
{
dest.Reason = (Hl7.Fhir.Model.Element)Reason.DeepCopy();
}
if (Performer != null)
{
dest.Performer = new List <Hl7.Fhir.Model.Procedure.PerformerComponent>(Performer.DeepCopy());
}
if (Performed != null)
{
dest.Performed = (Hl7.Fhir.Model.Element)Performed.DeepCopy();
}
if (Encounter != null)
{
dest.Encounter = (Hl7.Fhir.Model.ResourceReference)Encounter.DeepCopy();
}
if (Location != null)
{
dest.Location = (Hl7.Fhir.Model.ResourceReference)Location.DeepCopy();
}
if (Outcome != null)
{
dest.Outcome = (Hl7.Fhir.Model.CodeableConcept)Outcome.DeepCopy();
}
if (Report != null)
{
dest.Report = new List <Hl7.Fhir.Model.ResourceReference>(Report.DeepCopy());
}
if (Complication != null)
{
dest.Complication = new List <Hl7.Fhir.Model.CodeableConcept>(Complication.DeepCopy());
}
if (FollowUp != null)
{
dest.FollowUp = new List <Hl7.Fhir.Model.CodeableConcept>(FollowUp.DeepCopy());
}
if (Request != null)
{
dest.Request = (Hl7.Fhir.Model.ResourceReference)Request.DeepCopy();
}
if (Notes != null)
{
dest.Notes = new List <Hl7.Fhir.Model.Annotation>(Notes.DeepCopy());
}
if (FocalDevice != null)
{
dest.FocalDevice = new List <Hl7.Fhir.Model.Procedure.FocalDeviceComponent>(FocalDevice.DeepCopy());
}
if (Used != null)
{
dest.Used = new List <Hl7.Fhir.Model.ResourceReference>(Used.DeepCopy());
}
return(dest);
}
else
{
throw new ArgumentException("Can only copy to an object of the same type", "other");
}
}