private void ToolStripMenuItem_OperationsClustering(object sender, EventArgs e)
{
cClustering CC = new cClustering();
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
if (this.Input.ListRowNames != null)
{
CET.ListRowNames = new List<string>();
foreach (var item in this.Input.ListRowNames)
CET.ListRowNames.Add(item);
}
if (this.Input.ListTags != null)
{
CET.ListTags = new List<object>();
foreach (var item in this.Input.ListTags)
CET.ListTags.Add(item);
}
CET.Name = "Sub["+this.Input.Name+"]";
CC.SetInputData(CET);
//CC.ListProperties.FindByName("Number of Clusters").SetNewValue((int)3);
//CC.ListProperties.FindByName("Number of Clusters").IsGUIforValue = true;
if (!CC.Run().IsSucceed) return;
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CC.GetOutPut());
CDT.Run();
}
private cExtendedTable GenerateArtifactMessage(cExtendedTable TmpTable, cPlate PlateToProcess)
{
cLinearize Lin = new cLinearize();
Lin.SetInputData(TmpTable);
Lin.Run();
cExtendedTable LINTable = Lin.GetOutPut();
cClustering Cluster = new cClustering();
Cluster.SetInputData(LINTable);
Cluster.ParamAlgoForClustering = this.ParamAlgoForClustering;
if (Cluster.Run().IsSucceed == false) return null;
this.ClusteredTable = Cluster.GetOutPut();
// now clustering
//if (!KMeans((int)cGlobalInfo.OptionsWindow.numericUpDownSystErrorIdentKMeansClasses.Value, PlateToProcess, CurrentDescSel))
//{
// List<string> ListMessageError = new List<string>();
// ListMessageError.Add("K-Means Error");
// return ListMessageError;
//}
//// and finally classification
// return this.ComputePlateBasedClassification(MinObjectsNumber);
//}
cExtendedTable ET = PlateToProcess.ListWells.GetPositionRelatedSignatures();
ET.Add(this.ClusteredTable[this.ClusteredTable.Count - 1]);
weka.core.Instances insts = ET.CreateWekaInstancesWithClasses(); //CurrentPlateToProcess.CreateInstancesWithClassesWithPlateBasedDescriptor(Classes);
weka.classifiers.trees.J48 ClassificationModel = new weka.classifiers.trees.J48();
ClassificationModel.setMinNumObj(MinObjectsNumber);
weka.core.Instances train = new weka.core.Instances(insts, 0, insts.numInstances());
ClassificationModel.buildClassifier(train);
string DotString = ClassificationModel.graph().Remove(0, ClassificationModel.graph().IndexOf("{") + 2);
int DotLenght = DotString.Length;
string NewDotString = DotString.Remove(DotLenght - 3, 3);
// display the tree is requested
//cDisplayTree DT = new cDisplayTree();
//DT.SetInputData(NewDotString);
//DT.Run();
cExtendedTable ToReturn = new cExtendedTable(4, 1, 0);
ToReturn.ListRowNames = new List<string>();
ToReturn.ListTags = new List<object>();
int CurrentPos = 0;
int NextReturnPos = CurrentPos;
List<int> ListNodeId = new List<int>();
string TmpDotString = NewDotString;
int TmpClass = 0;
string ErrorString = "";
int ErrorMessage = 0;
ToReturn[0].Name = "Edge artifact"; // edge
ToReturn[1].Name = "Column artifact"; // col
ToReturn[2].Name = "Row artifact"; // row
ToReturn[3].Name = "Bowl artifact"; // bowl
#region build message
while (NextReturnPos != -1)
{
int NextBracket = NewDotString.IndexOf("[");
string StringToProcess = NewDotString.Remove(NextBracket - 1);
string StringToProcess1 = StringToProcess.Remove(0, 1);
if (StringToProcess1.Contains("N") == false)
{
int Id = Convert.ToInt32(StringToProcess1);
int LabelPos = NewDotString.IndexOf("label=\"");
string LabelString = NewDotString.Remove(0, LabelPos + 7);
LabelPos = LabelString.IndexOf("\"");
string FinalLabel = LabelString.Remove(LabelPos);
// if (TmpClass < Classes)
{
if ((FinalLabel == "Dist_To_Border") || (FinalLabel == "Col_Pos") || (FinalLabel == "Row_Pos") || (FinalLabel == "Dist_To_Center"))
{
if ((FinalLabel == "Dist_To_Border") && (!ErrorString.Contains(" an edge effect")) && (!ErrorString.Contains(" a bowl effect")) && (ErrorMessage < 2))
{
if (TmpClass > 0) ErrorString += " combined with";
ErrorString += " an " + cGlobalInfo.ListArtifacts[0];
ErrorMessage++;
ToReturn[0][0] = 1;
}
else if ((FinalLabel == "Col_Pos") && (!ErrorString.Contains(" a column artifact")) && (ErrorMessage < 2))
{
if (TmpClass > 0) ErrorString += " combined with";
ErrorString += " a " + cGlobalInfo.ListArtifacts[1];
ErrorMessage++;
ToReturn[1][0] = 1;
}
else if ((FinalLabel == "Row_Pos") && (!ErrorString.Contains(" a row artifact")) && (ErrorMessage < 2))
{
if (TmpClass > 0) ErrorString += " combined with";
ErrorString += " a " + cGlobalInfo.ListArtifacts[2];
ErrorMessage++;
ToReturn[2][0] = 1;
}
else if ((FinalLabel == "Dist_To_Center") && (!ErrorString.Contains(" a bowl effect")) && (!ErrorString.Contains(" an edge effect")) && (ErrorMessage < 2))
{
if (TmpClass > 0) ErrorString += " combined with";
ErrorString += " a " + cGlobalInfo.ListArtifacts[3];
ErrorMessage++;
ToReturn[3][0] = 1;
}
TmpClass++;
}
}
}
NextReturnPos = NewDotString.IndexOf("\n");
if (NextReturnPos != -1)
{
string TmpString = NewDotString.Remove(0, NextReturnPos + 1);
NewDotString = TmpString;
}
}
if (TmpClass == 0)
{
string NoError = "No systematic error detected !";
ToReturn.ListTags.Add(NoError);
//ToReturn.Add(NoError);
return ToReturn;
}
string FinalString = "You have a systematic error !\nThis is " + ErrorString;
NewDotString = TmpDotString;
NextReturnPos = 0;
while (NextReturnPos != -1)
{
int NextBracket = NewDotString.IndexOf("[");
string StringToProcess = NewDotString.Remove(NextBracket - 1);
string StringToProcess1 = StringToProcess.Remove(0, 1);
if (StringToProcess1.Contains("N"))
{
//// this is an edge
string stringNodeIdxStart = StringToProcess1.Remove(StringToProcess1.IndexOf("-"));
int NodeIdxStart = Convert.ToInt32(stringNodeIdxStart);
string stringNodeIdxEnd = StringToProcess1.Remove(0, StringToProcess1.IndexOf("N") + 1);
int NodeIdxSEnd = Convert.ToInt32(stringNodeIdxEnd);
int LabelPos = NewDotString.IndexOf("label=");
LabelPos += 7;
string CurrLabelString = NewDotString.Remove(0, LabelPos);
}
NextReturnPos = NewDotString.IndexOf("\n");
if (NextReturnPos != -1)
{
string TmpString = NewDotString.Remove(0, NextReturnPos + 1);
NewDotString = TmpString;
}
}
ToReturn.ListTags.Add(FinalString + ".");
#endregion
return ToReturn;
}