public bool DocumentEcho(string fileName)
{
string fileWithExt = Path.GetFileNameWithoutExtension(fileName);
GICO.WriteLine(String.Format("{0}> {1} {2}:{3}", fileWithExt, DateTime.Now, "Download", fileName));
return(true);
}
private static void SendMail(GridProteinFoldingEntities ctx, Guid guid, string message, string webServerName)
{
//Sent e-mail
SmtpClient smtpClient = new SmtpClient();
Process process = ctx.Process.FirstOrDefault(p => p.guid == guid);
aspnet_Users user = new GridProteinFolding_MemberShipEntities().aspnet_Users.FirstOrDefault(u => u.UserId == process.userId);
try
{
string key = string.Empty;
System.Net.Mail.MailAddress to = new System.Net.Mail.MailAddress(user.aspnet_Membership.LoweredEmail, user.UserName);
string subject = "eFolding - Simulation";
string body = "Simulation " + process.guid.ToString() + message;
body += "</br>Direct access: " + string.Format("http://" + webServerName + "/Pages/SimulationAddEdit.aspx?guId={0}", process.guid.ToString());
smtpClient.Send(to, subject, body);
}
catch (Exception ex)
{
GICO.WriteLine(ex);
}
finally
{
smtpClient = null;
}
}
void Upload(ServiceParamWcf paramWCF)
{
try
{
Guid guid = paramWCF.param.dataToProcess.Guid;
//string path = ConfigurationManager.AppSettings["dirBaseClient"].ToString() + guid;
string path = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments) + @"\efolding.fcfrp.usp.br\Client\" + guid;
//string destPath = ConfigurationManager.AppSettings["uploadFolder"].ToString();
string destPath = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments) + @"\efolding.fcfrp.usp.br\Client\_temp\" + guid;
SIO.FileInfo sourceFile = new File().FileInfos(path + ".zip");
SIO.FileInfo destFileName = new File().FileInfos(destPath + ".zip");
//Valida se arquivo não existe, de uma tentativa de enviado anterior
if (previousSimulation == false) //!File.Exists(destFileName.FullName) &&
{
//Compress FILE
//GICO.WriteLine(guid, rm.GetString("UploadCompression"));
GICO.WriteLine(guid, "UploadCompression");
Compression.Compress(guid, sourceFile, new ExtendedDirectoryInfo(path), true, string.Empty);
if (File.Exists(destFileName.FullName))
{
File.Delete(destFileName.FullName);
}
//GICO.WriteLine(guid, rm.GetString("UploadFileMove"));
GICO.WriteLine(guid, "UploadFileMove");
File.Move(sourceFile.FullName, destFileName.FullName);
}
GICO.WriteLine(guid, ExtendedString.Format("Upload file {0}..", destFileName.Name));
ProxyDocumentManagmentClient.DocumentEcho(destFileName);
using (System.IO.BinaryReader fs = new System.IO.BinaryReader(System.IO.File.Open(destFileName.FullName, System.IO.FileMode.Open)))
{
int pos = 0;
bool append = false;
int length = (int)fs.BaseStream.Length;
while (pos < length)
{
byte[] bytes = fs.ReadBytes(1024 * 1024);
ProxyDocumentManagmentClient.UploadDocument(destFileName, bytes, append);
append = true;
pos += 1024 * 1024;
}
}
//Extract
GICO.WriteLine(guid, ExtendedString.Format("Extract file {0}..", destFileName.Name));
ProxyDocumentManagmentClient.ExtractDocument(destFileName);
}
catch (Exception ex)
{
throw ex;
}
}
public static Process GetOneProcess(RequestorInfo requestorInfo)
{
Process tempProcess = new Process();
using (GridProteinFoldingEntities ctx = new GridProteinFoldingEntities())
{
tempProcess = ctx.Process.Include("DataToProcess").Include("DataToResult").Include("Model").Include("ConfigApp").Include("Output").FirstOrDefault(p => p.status_id == 1); // || p.status_id == 3 || p.status_id == 4);
try
{
if (tempProcess != null)
{
//TRATATIVA de INTEGRIDADE dos DADOS
ParseIntegration(ref tempProcess);
//SETA STATUS, se possível
SetStatus(ref tempProcess, ref requestorInfo);
}
return(tempProcess);
}
catch (Exception ex)
{
GICO.WriteLine(String.Format("{0}> {1} ({2} {3})", tempProcess.guid.ToString(), DateTime.Now, "Exception:", ex.Message.ToString()));
BasicEnums.State newstatus = BasicEnums.State.Error;
SetOneProcess(tempProcess.guid, newstatus, requestorInfo);
return(null);
}
}
}
private void OpenSheet(Param param)
{
try
{
String strWkName = "ScatterData";
pWorksheet = pOrigin.FindWorksheet(strWkName);
if (pWorksheet == null) //if check don't exist, create workbook
{
strWkName = (String)pOrigin.CreatePage((int)Origin.PAGETYPES.OPT_WORKSHEET, strWkName, "Origin", 2);
}
pWorksheet = (Worksheet)pOrigin.WorksheetPages[strWkName].Layers[0];
//prepare XYZ column for putting data
pWorksheet.Cols = 3;
Column colA = pWorksheet.Columns[0];
colA.Type = COLTYPES.COLTYPE_X;
Column colB = pWorksheet.Columns[1];
colB.Type = COLTYPES.COLTYPE_Y;
Column colC = pWorksheet.Columns[2];
colC.Type = COLTYPES.COLTYPE_Z;
//prepare graph layer for plotting
String strGrName = "3DScatterPlot"; //if check don't exist, create it.
pGraphLayer = pOrigin.FindGraphLayer(strGrName);
if (pGraphLayer == null)
{
strGrName = (String)pOrigin.CreatePage((int)Origin.PAGETYPES.OPT_GRAPH, strGrName, "3D", 2); //3D scatter need "3D" template
}
pGraphLayer = (GraphLayer)pOrigin.GraphPages[strGrName].Layers[0];
//parepare XYZDataRange
DataRange drXYZ = pWorksheet.NewDataRange(0, 0, -1, -1);
//plot 3D scatter on GraphLayer
String strPlotName = "ScatterData_C"; //if exists, don't add new plot, plot name is related to workbook name and column name.
pDataPlot = pGraphLayer.DataPlots[strPlotName];
if (pDataPlot == null)
{
pDataPlot = pGraphLayer.DataPlots.Add(drXYZ, PLOTTYPES.IDM_PLOT_3D_SCATTER);
}
//force axis rescale as auto to make plot visible
pGraphLayer.Execute("layer.x.rescale=3");
pGraphLayer.Execute("layer.y.rescale=3");
pGraphLayer.Execute("layer.z.rescale=3");
SentData(param);
}
catch (System.Exception ex)
{
String strMsg = ResourceException.Origin_FailedPlotting;
GICO.WriteLine(strMsg);
GICO.WriteLine(ex);
throw;
}
}
private void ModelForFile(ref double cont, ref int cadeiaIdeal, ref int cadeiaReal, ref int cadeiaSoft, ref int cadeiaError)
{
string[] lines = Regex.Split(AppConfigClient.Param.dataToProcess.file, "\r\n");
//foreach (string line in lines)
for (int i = 0; i < lines.Count(); i++)
{
string line = lines[i];
try
{
Structs.BasicStructs.Point tempCoord = new Structs.BasicStructs.Point();
string[] coord = line.Split(new char[] { '\t' });
tempCoord.x = Convert.ToInt32(coord[0]);
tempCoord.y = Convert.ToInt32(coord[1]);
tempCoord.z = Convert.ToInt32(coord[2]);
GCPS.chain.r.Add(tempCoord);
}
catch (FormatException ex)
{
GICO.WriteLine(ex);
}
}
ProcessMonomero(ref cont, ref cadeiaIdeal, ref cadeiaReal, ref cadeiaSoft, ref cadeiaError);
//Prepara aplicação para gerar uma nova ISEM
Protein.ClearAppToGenNewIsem();
}
public void MoveFile()
{
try
{
string dirSouce = dirBaseWeb.FullName() + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirDebug;
string dirDestine = dirBaseWeb.FullName() + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirResult;
GridProteinFolding.Middle.Helpers.IOHelpers.Directory.CreateDirIfNotExist(dirDestine);
foreach (string tempFile in Directory.GetFilesOfDir(dirSouce))
{
GridProteinFolding.Middle.Helpers.IOHelpers.File.Copy(tempFile, dirDestine + @"\\" + Path.GetFileName(tempFile), true);
}
GridProteinFolding.Middle.Helpers.IOHelpers.Directory.DeleteFileAndDirIfExists(dirSouce, null);
GridProteinFolding.Middle.Helpers.IOHelpers.Directory.Delete(dirSouce);
int posBar = dirSouce.LastIndexOf(@"\", StringComparison.Ordinal);
GridProteinFolding.Middle.Helpers.IOHelpers.Directory.DeleteFileAndDirIfExists(dirSouce.Substring(0, dirSouce.Length - (dirSouce.Length - posBar)), null);
}
catch (Exception ex)
{
GICO.WriteLine(ex);
throw;
}
}
private void Close(Param param)
{
GICO.WriteLine("OriginConnect: Closing Origin..");
if (pOrigin != null)
{
pOrigin.Visible = MAINWND_VISIBLE.MAINWND_HIDE;
pOrigin.Exit();
System.Runtime.InteropServices.Marshal.FinalReleaseComObject(pOrigin);
pWorksheet = null;
pGraphLayer = null;
pDataPlot = null;
pOrigin = null;
//int hWnd = pOrigin.Application.Hwnd;
//Force KILL
//uint processID;
//GetWindowThreadProcessId((IntPtr)hWnd, out processID);
System.Diagnostics.Process[] procs = System.Diagnostics.Process.GetProcessesByName("Origin~1");
foreach (System.Diagnostics.Process p in procs)
{
//if (p.Id == processID)
p.Kill();
}
}
}
public static Process GetOneProcessGuiForETL(Guid gui, Services.DistributedService.RequestorInfo requestorInf)
{
Process tempProcess = new Process();
using (GridProteinFoldingEntities ctx = new GridProteinFoldingEntities())
{
tempProcess = ctx.Process.Include("DataToProcess").Include("DataToResult").Include("Model").Include("ConfigApp").Include("Output").FirstOrDefault(p => p.guid == gui);
try
{
if (tempProcess != null)
{
//TRATATIVA de INTEGRIDADE dos DADOS
ParseIntegration(ref tempProcess);
GICO.WriteLine(gui, String.Format("{0} {1} @ {2}({3})", DateTime.Now, "Processing ETL", requestorInf.macAddr, requestorInf.machineName));
}
return(tempProcess);
}
catch (Exception ex)
{
GICO.WriteLine(String.Format("{0} {1} ({2} {3})", tempProcess.guid.ToString(), DateTime.Now, "Exception:", ex.Message.ToString()));
BasicEnums.State newstatus = BasicEnums.State.ETLError;
SetOneProcess(tempProcess.guid, newstatus, requestorInf);
return(null);
}
}
}
private void Integrator(Param param, Helpers.ConfigurationHelpers.Output output)
{
//deleta arquivo, se existir
if (File.Exists(dirServerExcel + @"\" + excelFileName))
{
File.Delete(dirServerExcel + @"\" + excelFileName);
}
GridProteinFolding.Middle.Helpers.IOHelpers.Directory.CreateDirIfNotExist(dirServerExcel);
XLWorkbook workbook = new XLWorkbook();
if (output.distribution)
{
GICO.WriteLine(String.Format(" Excel: SheetDistribution..."));
SheetDistribution(ref workbook);
Save(ref workbook);
}
if (param.output.evolution)
{
GICO.WriteLine(String.Format(" Excel: SheetEvolutionRadiusGyration..."));
SheetEvolutionRadiusGyration(ref workbook);
GICO.WriteLine(String.Format(" Excel: SheetEvolutionValueMediumOfEnergy..."));
SheetEvolutionValueMediumOfEnergy(ref workbook);
Save(ref workbook);
}
if (param.output.configuration)
{
GICO.WriteLine(String.Format(" Excel: SheetConfiguration..."));
SheetConfiguration(ref workbook);
Save(ref workbook);
}
if (output.histogram)
{
GICO.WriteLine(String.Format(" Excel: SheetsHistogram..."));
SheetsHistogram(ref workbook);
Save(ref workbook);
}
if (output.trajectory)
{
GICO.WriteLine(String.Format(" Excel: SheetTrajectory..."));
SheetTrajectory(ref workbook);
Save(ref workbook);
}
if (output.debug)
{
GICO.WriteLine(String.Format(" Excel: SheetDebug..."));
SheetDebug(ref workbook);
Save(ref workbook);
}
workbook = null;
}
/// <summary>
/// Drop a table
/// </summary>
private static bool DropTable()
{
try
{
string sql = "DROP TABLE Process";
SQLiteCommand command = new SQLiteCommand(sql, m_dbConnection);
command.ExecuteNonQuery();
return(true);
}
catch (SQLiteException ex)
{
new CustomLog().Exception(ex);
GICO.WriteLine("TABLE Process not exist!");
return(false);
}
}
/// <summary>
/// Creates a table
/// </summary>
private static bool CreateTable()
{
try
{
string sql = "CREATE TABLE Process (guid VARCHAR(255) PRIMARY KEY, status INT, date VARCHAR(19) )";
SQLiteCommand command = new SQLiteCommand(sql, m_dbConnection);
command.ExecuteNonQuery();
return(true);
}
catch (SQLiteException ex)
{
new CustomLog().Exception(ex);
GICO.WriteLine("TABLE Process exist!");
return(false);
}
}
private static bool SendMail(GridProteinFoldingEntities ctx, Guid guid, string message, aspnet_Users user)
{
//Sent e-mail
Middle.Helpers.NetworkHelpers.SmtpClient smtpClient = new Middle.Helpers.NetworkHelpers.SmtpClient();
Process process = ctx.Process.FirstOrDefault(p => p.guid == guid);
if (!(process.emailNotification == Convert.ToByte(BasicEnums.EmailNotification.Enviar)))
{
try
{
System.Net.Mail.MailAddress to = new System.Net.Mail.MailAddress(user.aspnet_Membership.LoweredEmail, user.UserName);
string subject = "eFolding - Simulation";
string body = "Simulation " + process.guid.ToString() + message;
body += "Direct access: efolding.fcfrp.usp.br/Pages/GCPS.aspx?guid= " + process.guid.ToString();
if (smtpClient.Send(to, subject, body))
{
return(true);
}
else
{
return(false);
}
}
catch (SmtpException ex)
{
new GridProteinFolding.Middle.Helpers.LoggingHelpers.Log().SmtpException(ex, Types.ErrorLevel.Warning);
return(false);
}
catch (Exception ex)
{
GICO.WriteLine(ex);
throw;
}
finally
{
smtpClient = null;
}
}
else
{
return(true);
}
}
public void Decrypt()
{
try
{
dirDebug = DirBaseServer + this.param.dataToProcess.Guid + @"\" + Resource.DirDebug + @"\" + Resource.DirDebug;
dirTrajectory = DirBaseServer + this.param.dataToProcess.Guid + @"\" + Resource.DirResult + @"\" + Resource.SubDirTrajectory;
string destination = DirBaseWeb + this.param.dataToProcess.Guid + @"\" + Resource.DirDebug + @"\";
string[] diretories = { dirDebug, dirTrajectory };
DecrypAllFiles(diretories, destination);
}
catch (Exception ex)
{
GICO.WriteLine(ex);
throw;
}
}
private void Start(bool showDialogBox)
{
try
{
pOrigin = new ApplicationSI();
}
catch (System.Exception ex)
{
String strMsg = ResourceException.Origin_FailedPlotting;
GICO.WriteLine(strMsg);
GICO.WriteLine(ex);
return;
}
//Show o DIALOG BOX do ORIGIN
if (showDialogBox)
{
pOrigin.Visible = MAINWND_VISIBLE.MAINWND_SHOW;
}
}
private void Save(Param param)
{
GICO.WriteLine("OriginConnect: Salving fileReader..");
if (pOrigin != null)
{
if (!Directory.Exists(dirOrigin))
{
Directory.CreateDirectory(dirOrigin);
}
string pathFile = dirOrigin + @"\" + param.dataToProcess.Guid.ToString() + Resource.OriginProjectFile;
if (File.Exists(pathFile))
{
File.Delete(pathFile);
}
pOrigin.Save(pathFile);
}
}
public void Execute(Helpers.ConfigurationHelpers.Output output)
{
//Config.CurrentGuid = param.dataToProcess.Guid;
//try
//{
this.maxInterations = param.dataToProcess.maxInterations; //numero maximo de tentativas
this.sites = param.dataToProcess.totalSitio; //número total de sítios do monomero
this.dirServerExcel = DirBaseServer + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirResult + @"\" + Resource.SubDirExcel;
this.dirWebExcel = DirBaseWeb + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirResult;// + @"\" + Resource.SubDirExcel;
this.dirServerNeighbors = DirBaseServer + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirDebug + @"\" + Resource.SubDirNeighbors;
this.dirServerHistogram = DirBaseServer + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirDebug + @"\" + Resource.SubDirHistogram;
this.dirServerDebug = DirBaseServer + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirDebug + @"\" + Resource.SubDirDebug;
this.dirWebDebug = DirBaseWeb + param.dataToProcess.Guid.ToString() + @"\" + Resource.DirDebug + @"\" + Resource.SubDirDebug;
excelFileName = param.dataToProcess.Guid.ToString() + ".xlsx";
valueDivResult = param.dataToResults.valueDivResult;
this.MCSteps = maxInterations * sites * 5;
this.delta = MCSteps / valueDivResult;
//IF EXIST, EXECUTE INTEGRATOR
if (Directory.Exists(dirServerDebug))
{
GICO.WriteLine(String.Format(" Excel: Integrator..."));
Integrator(param, output);
GICO.WriteLine(String.Format(" Excel: CopyFile..."));
CopyFile(param);
}
else
{
GICO.WriteLine(AppConfigClient.CurrentGuid, String.Format("Directory not found: {0} Integrator of Excel not executed...", dirServerDebug));
}
//}
//catch (Exception ex)
//{
// GICO.WriteLine(ex);
//}
}
private void SentData(Param param)
{
GICO.WriteLine("OriginConnect: Salving points of Seed {0}..", param.dataToProcess.Guid.ToString());
//Protein.LoadSeedCoord(fileReader, true);
using (GridProteinFoldingEntities ctx = new GridProteinFoldingEntities())
{
List <Entities.Internal.Configuration> configuration = ctx.Configuration.Where(c => c.process_guid == param.dataToProcess.Guid && c.mcStep == 0).ToList();
foreach (Entities.Internal.Configuration coordinate in configuration)
{
int nFactor = pWorksheet.Rows;
pointX = coordinate.x;
pointY = coordinate.y;
pointZ = coordinate.z;
double[,] Data = new double[1, 3];
Data[0, 0] = pointX;
Data[0, 1] = pointY;
Data[0, 2] = pointZ;
pWorksheet.SetData(Data, -1, 0); //append
}
}
}
public static void PrintPercentCompleted(int actual, int max)
{
long maxInterations = max;
if (actual != 0)
{
double percent = actual;
percent = ((percent * 100) / maxInterations);
int value = Convert.ToInt32(percent.ToString("00.##").Substring(0, 2));
//switch (value)
//{
// case 10:
// case 20:
// case 30:
// case 40:
// case 50:
// case 60:
// case 70:
// case 80:
// case 90:
// case 100:
if (lastNumber < value)
{
lastNumber = value;
GICO.WriteLine(lastNumber + "%.. ");
}
// break;
//}
}
else
{
GICO.WriteLine("0%.. ");
}
}
public static List <Structs.BasicStructs.Point> CreateTarget(List <TargetsCoordinates> lstTargetsCoordinates)
{
//Efetua a leitura do modelo da "Sequência X"
string strucFull = string.Empty; // "1 2 3 6 5 4 7 8 9 18 17 16 13 10 11 12 15 14 23 20 21 24 27 26 25 22 19";
//string[] struc = strucFull.Split(' '); //Quebra a linha em posições na array atravéz do espaço
//struc = struc.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //Remove os espaços em branco, deixa estrutura somente com posições válidas
string[] struc = new string[lstTargetsCoordinates.Count];
int j = 0;
foreach (TargetsCoordinates item in lstTargetsCoordinates)
{
struc[j++] = item.value.ToString();
}
//Lê o arquivo sample de geração das coordenadas
string line;
List <Structs.BasicStructs.Point> coord = new List <Structs.BasicStructs.Point>();
ExtendedStreamReader file = new ExtendedStreamReader(AppDomain.CurrentDomain.BaseDirectory + @"\coord" + Directory.FileExtension, Config.CurrentGuid, false);
while ((line = file.ReadLine()) != null)
{
string[] temp = line.Split(' ');
temp = temp.Where(x => !string.IsNullOrEmpty(x)).ToArray();
coord.Add(new Structs.BasicStructs.Point()
{
x = Convert.ToInt16(temp[0]), y = Convert.ToInt16(temp[1]), z = Convert.ToInt16(temp[2])
});
}
file.Close();
//Incrimento inicial das posições do cubo x,y,z
List <Point> points = new List <Point>(); //Uma lista encadeada do tipo PointCube
for (int i = 0; i < coord.Count(); i++)
{
int pos = Convert.ToInt16(struc[i]) - 1;
Point point = new Point()
{
x = coord[pos].x, y = coord[pos].y, z = coord[pos].z
};
points.Add(point);
GICO.WriteLine(Config.CurrentGuid, String.Format("{0},{1},{2}", points[i].x, points[i].y, points[i].z));
}
//Cria um cadeia de simulação
GCPS.chain = new Structs.BasicStructs.Chain();
foreach (Point item in points)
{
GCPS.chain.r.Add(new Structs.BasicStructs.Point()
{
x = item.x,
y = item.y,
z = item.z,
deadEnd = 0,
deadEndPoints = string.Empty,
neighbors = new Structs.BasicStructs.Neighbor[6],
e = new List <TypeE>()
});
}
return(GCPS.chain.r);
}
public void Execute()
{
GICO.WriteLine("OriginConnect: Starting..");
Init(true, param);
}
public void LoadConfigurationOutPutForOrigin()
{
GICO.WriteLine(String.Format(" Output: LoadConfigurationOutPutToOrigin: Delete..."));
////Delete IF EXIST
//using (GridProteinFoldingEntities ctx = new GridProteinFoldingEntities())
//{
// ctx.Database.ExecuteSqlCommand("DELETE FROM OUTPUT WHERE guid= {0}", param.dataToProcess.Guid);
//}
string readerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Configuration.dat";
using (ExtendedStreamReader souceFile = new ExtendedStreamReader(readerFile,
this.param.dataToProcess.Guid, false))
{
string line;
int i = 0;
GICO.WriteLine(String.Format(" Output: LoadConfigurationOutPutToOrigin: Insert..."));
while ((line = souceFile.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
//pulas cabeçalho e o número de discartes
if (i == 0)
{
line = souceFile.ReadLine();
}
string[] data = line.Split('\t').ToArray();
Int32 mcStep = 0;
int order = 0;
int count = 0;
using (TransactionScope scope = new TransactionScope())
{
GridProteinFoldingEntities ctx = null;
try
{
ctx = new GridProteinFoldingEntities();
Entities.Internal.Configuration configuration = null;
for (int j = 0; j < data.Length; j++)
{
if (j == 0)
{
mcStep = Convert.ToInt32(data[j]); j++;
}
configuration = new Entities.Internal.Configuration();
configuration.process_guid = this.param.dataToProcess.Guid;
configuration.mcStep = mcStep;
configuration.order = order;
configuration.x = Convert.ToInt32(data[j]); j++;
configuration.y = Convert.ToInt32(data[j]); j++;
configuration.z = Convert.ToInt32(data[j]);
order++;
++count;
ctx = AddToContext(ctx, configuration, count, 100, true);
//ctx.Configuration.Add(configuration);
}
if (configuration != null)
{
ctx.SaveChanges();
configuration = null;
}
}
finally
{
if (ctx != null)
{
ctx.Dispose();
}
}
scope.Complete();
}
i++;
}
souceFile.Close();
//souceFile = null;
souceFile.Dispose();
}
}
public bool Process(ref Param param)
{
GridProteinFolding.Middle.Helpers.LoggingHelpers.Log.InformationLog("Process begin...");
#region Set configuracao
AppConfigClient.Param = param;
Middle.Helpers.RandomHelpers.Randomic.magicNumber = param.configApp.MagicNumber;
Middle.Helpers.RandomHelpers.Randomic.equal_one = param.configApp.EqualOne;
#endregion
GICO.WriteLine(AppConfigClient.CurrentGuid, "Connected...");
//PREPARA os DIRETORIOS
//ConsoleOut.WriteLine(AppConfigClient.CurrentGuid, "Working in temp folder(PreperFolderForLocationsDebug)...");
new GridProteinFolding.Core.eFolding.IO.Directory().PreperFolderForLocationsDebug();
//posição do último monomero válido
int lastValed = int.MinValue;
GCPS.initialIsem = AppConfigClient.Param.dataToProcess.isem;
//Inicializa o Monomero da simulação
GCPS.chain = new Structs.BasicStructs.Chain();
GCPS.modelType = AppConfigClient.Param.dataToProcess.modelType;
//GCPS.model = new List<Structs.BasicStructs.Model>();
//if (GCPS.model.Count > 0)
//{
// foreach (String tempSplit in param.dataToProcess.model.Split(';'))
// {
// Structs.BasicStructs.Model tempModel = new Structs.BasicStructs.Model();
// string[] tempSubSplit = tempSplit.Split(',');
// tempModel.Monomero = Convert.ToByte(tempSubSplit[0]);
// tempModel.Value = float.Parse(tempSubSplit[1]);
// GCPS.model.Add(tempModel);
// }
//}
//Seleciona o tipo de formação de estrutura a ser utilizada
//Geração Randomica?
//Geração por arquivo?
//Geração apartir de um modelo?
double cont = 0;
SelectTypeOfStruct(ref lastValed, ref cont, ref cadeiaIdeal, ref cadeiaReal, ref cadeiaSoft, ref cadeiaError);
GICO.WriteLine(AppConfigClient.CurrentGuid, String.Format("Total Monomeros: {0}", AppConfigClient.Param.dataToProcess.maxInterations));
GICO.WriteLine(AppConfigClient.CurrentGuid, String.Format("Cadeia ideal : {0}", cadeiaIdeal));
GICO.WriteLine(AppConfigClient.CurrentGuid, String.Format("Cadeia real : {0}", cadeiaReal));
GICO.WriteLine(AppConfigClient.CurrentGuid, String.Format("Cadeia soft : {0}", cadeiaSoft + "(" + (AppConfigClient.Param.dataToProcess.maxInterations - cadeiaIdeal - cadeiaReal) + ")"));
GICO.WriteLine(AppConfigClient.CurrentGuid, String.Format("Cadeia error : {0}", cadeiaError));
GICO.WriteLine(AppConfigClient.CurrentGuid, "Salving results...");
GICOF.CalcOfFrequency.SaveData(BasicEnums.ChainTypes.Ideal, Structs.Queue <QueueType> .valuesCadeiaIdeal);
GICOF.CalcOfFrequency.SaveData(BasicEnums.ChainTypes.Real, Structs.Queue <QueueType> .valuesCadeiaReal);
GICOF.CalcOfFrequency.SaveData(BasicEnums.ChainTypes.Soft, Structs.Queue <QueueType> .valuesCadeiaSoft);
ConsoleOut.WriteLine(AppConfigClient.CurrentGuid, "Creating histogram...");
GICOF.CalcOfFrequency.WriteFrequencyPeerInterval(BasicEnums.HistTypes.RadiuosOfGyration, BasicEnums.ChainTypes.Ideal);
GICOF.CalcOfFrequency.WriteFrequencyPeerInterval(BasicEnums.HistTypes.EndToEndDistance, BasicEnums.ChainTypes.Ideal);
GICOF.CalcOfFrequency.WriteFrequencyPeerInterval(BasicEnums.HistTypes.RadiuosOfGyration, BasicEnums.ChainTypes.Real);
GICOF.CalcOfFrequency.WriteFrequencyPeerInterval(BasicEnums.HistTypes.EndToEndDistance, BasicEnums.ChainTypes.Real);
GICOF.CalcOfFrequency.WriteFrequencyPeerInterval(BasicEnums.HistTypes.RadiuosOfGyration, BasicEnums.ChainTypes.Soft);
GICOF.CalcOfFrequency.WriteFrequencyPeerInterval(BasicEnums.HistTypes.EndToEndDistance, BasicEnums.ChainTypes.Soft);
ConsoleOut.WriteLine(AppConfigClient.CurrentGuid, "MCSteps finished.");
GC.GetTotalMemory(false);
GC.Collect();
GC.WaitForPendingFinalizers();
GridProteinFolding.Middle.Helpers.LoggingHelpers.Log.InformationLog("Process completed...");
return(true);
}
private bool Run(ServiceParamWcf paramWCF)
{
GridProteinFolding.Core.eFolding.Main objProcess = new GridProteinFolding.Core.eFolding.Main();
//Executa REQUISICAO
GridProteinFolding.Middle.Helpers.ConfigurationHelpers.Param newParam = new GridProteinFolding.Middle.Helpers.ConfigurationHelpers.Param();
//Preparar os parametros para execução
Param temp = paramWCF.param;
GridProteinFolding.Middle.Helpers.ConfigurationHelpers.Param.PreperParams(ref temp, ref newParam);
#region Atualiza Status local
if (Status(paramWCF.param.dataToProcess.Guid) == (int)BasicEnums.State.Processing)
{
Sql.entityProcess = SetStatusProcessandoLocalDBToProcessing(newParam, BasicEnums.State.Processing);
}
#endregion
try
{
//if (Status(paramWCF.param.dataToProcess.Guid) == (int)BasicEnums.State.Waiting)
//{
// DisplayMessage(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, BasicEnums.State.Waiting.ToString()));
// Sql.entityProcess = SetStatusProcessando(newParam, BasicEnums.State.Processing);
//}
if (Status(paramWCF.param.dataToProcess.Guid) == (int)BasicEnums.State.Processing)
{
DisplayMessage(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, BasicEnums.State.Processing.ToString()));
Processing(ref objProcess, ref newParam, ref paramWCF);
if (returnOfProcess)
{
UpdateStatus(newParam, BasicEnums.State.Processed);
}
else
{
UpdateStatus(newParam, BasicEnums.State.Error);
DisplayMessage(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, BasicEnums.State.Error.ToString()));
}
}
if (Status(paramWCF.param.dataToProcess.Guid) == (int)BasicEnums.State.Processed)
{
DisplayMessage(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, BasicEnums.State.Processed.ToString()));
UpdateStatus(newParam, returnOfProcess == true ? BasicEnums.State.Upload : BasicEnums.State.Error);
//System.Threading.Thread.Sleep(1000);
}
if (Status(paramWCF.param.dataToProcess.Guid) == (int)BasicEnums.State.Upload)
{
DisplayMessage(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, (BasicEnums.State.Upload.ToString())));
returnOfProcess = true;
//Upload dos resultados
Upload(paramWCF);
//Atualiza Status
UpdateStatus(newParam, returnOfProcess == true ? BasicEnums.State.BULK : BasicEnums.State.Error);
//System.Threading.Thread.Sleep(500);
}
if (Status(paramWCF.param.dataToProcess.Guid) == (int)BasicEnums.State.ClearTempClient)
{
if (AppConfigClient.Param == null)
{
AppConfigClient.Param = newParam;
}
//Limpar folder cliente utilizado no processamento
new GridProteinFolding.Core.eFolding.IO.Directory().ClearProcessClientFolder();
//Atualiza Status
UpdateStatus(newParam, returnOfProcess == true ? BasicEnums.State.ClearTempServer : BasicEnums.State.Error);
DisplayMessage(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, returnOfProcess == true ? BasicEnums.State.ClearTempServer.ToString() : BasicEnums.State.Error.ToString()));
}
GICO.WriteLine(ExtendedString.Format("{0}> {1}...", paramWCF.param.dataToProcess.Guid, "Process of simulation finished!"));
return(returnOfProcess);
}
catch (Exception ex)
{
new CustomLog().Exception(ex);
UpdateStatus(newParam, BasicEnums.State.Error);
return(false);
}
//finally
//{
// GridProteinFolding.Data.SQLite.SQLite.CloseDatabase();
//}
}
private bool CallServer(GridProteinFolding.Data.XMLData.Entity.Process process)
{
bool retRun = false;
try
{
ServiceParamWcf paramWCF;
bool oneProcessPeerGuid = false;
//Se não existir pendência no cliente
if (process == null)
{
paramWCF = ProxyServiceClient.GetOneProcess();
}
else
{
paramWCF = ProxyServiceClient.GetOneProcessGui(process.guid);
oneProcessPeerGuid = true;
//Implementar a mudança de STATUS - qdo ocorrer erro POS processamento = UPLOAD e etc
//variavel RET (estara dentro Run) tem q estar setada pra TRUE...senao dara ERRO 99...
//Proxy.SetStatus(paramWCF, BasicEnums.State.Upload);
}
if (paramWCF != null)
{
ConsoleColor oldColour = Console.ForegroundColor;
GICO.ForegroundColor(ConsoleColor.Yellow);
DisplayMessage(string.Empty);
DisplayMessage(ExtendedString.Format("{0}> {1}", paramWCF.param.dataToProcess.Guid, Resource.Started));
GICO.ForegroundColor(oldColour);
if (oneProcessPeerGuid)
{
DisplayMessage(ExtendedString.Format("{0}> {1}", paramWCF.param.dataToProcess.Guid, Resource.GetOneProcess));
}
else
{
DisplayMessage(ExtendedString.Format("{0}> {1}", paramWCF.param.dataToProcess.Guid, Resource.GetOneProcessGui));
}
//Responde que esta sendo PROCESSADO
DisplayMessage(ExtendedString.Format("{0}> {1}", paramWCF.param.dataToProcess.Guid, Resource.Running));
retRun = Run(paramWCF);
DisplayMessage(ExtendedString.Format("{0}> {1}", paramWCF.param.dataToProcess.Guid, Resource.Finished));
DisplayMessage(string.Empty);
}
return(retRun);
}
catch (EndpointNotFoundException ex)
{
ConsoleColor oldColour = Console.ForegroundColor;
GICO.ForegroundColor(ConsoleColor.Red);
DisplayMessage(ex.Message);
GICO.ForegroundColor(oldColour);
new CustomLog().EndpointNotFoundException(ex);
}
return(false);
}
public void Distribution()
{
try
{
string readerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Debug.dat";
string writerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Distribution.dat";
Guid guid = param.dataToProcess.Guid;
int isem = param.dataToProcess.isem;
int sitios = param.dataToProcess.totalSitio;
//Data
string line;
List <ColsForDepedentModel> md = new List <ColsForDepedentModel>();
using (ExtendedStreamReader souceFile = new ExtendedStreamReader(readerFile,
this.param.dataToProcess.Guid, false))
{
ExtendedStreamWriter destinationFile = new ExtendedStreamWriter(writerFile, false,
this.param.dataToProcess.Guid, false);
string[] cols = null;
int i = 0;
while ((line = souceFile.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
//pulas cabeçalho & faz o discarte o número de discartes
if (i == 0)
{
for (int k = 0; k < this.valueDiscard; k++)
{
line = souceFile.ReadLine();
}
}
else
{
cols = line.Split('\t').ToArray();
Int32 _mcSteps = Convert.ToInt32(cols[0]);
double _rg = Convert.ToDouble(cols[3]);
double _e = Convert.ToDouble(cols[2]);
double _U = Convert.ToDouble(cols[8]);
md.Add(new ColsForDepedentModel()
{
mcSteps = _mcSteps, rg = _rg, e = _e, U = _U
});
//pula o Delta
for (int k = 0; k < this.delta; k++)
{
line = souceFile.ReadLine();
}
}
i++;
}
souceFile.Close();
//souceFile = null;
//Write result file
destinationFile.WriteLine("simulation id: {0}", guid.ToString());
destinationFile.WriteLine("isem: {0}", isem);
destinationFile.WriteLine("sitios: {0}", sitios);
destinationFile.WriteLine("model: {0}", TranslateModel(param.dataToProcess.modelType));
destinationFile.WriteLine("mcStep: {0}", this.mcSteps);
destinationFile.WriteLine("temperature: {0}", param.dataToProcess.temperature);
destinationFile.WriteLine("valueDiscard: {0}", this.valueDiscard);
destinationFile.WriteLine("delta: {0}", this.delta);
destinationFile.WriteLine("idx\t mcSteps\t rg2\t rg2(accumulated)\t <rg2>\t e\t e(accumulated)\t <e>\t U\t U(accumulated)\t <U>");
double aRG2, eRG2, previousRG2, actualRG2;
aRG2 = eRG2 = previousRG2 = actualRG2 = 0;
double aE, eE, previousE, actualE;
aE = eE = previousE = actualE = 0;
double aU, eU, previousU, actualU;
aU = eU = previousU = actualU = 0;
Int64 idx = 0;
for (int z = 0; z < md.Count(); z++)
{
idx = (z + 1);
//Acumulado
aRG2 += md[z].rg;
aE += md[z].e;
aU += md[z].U;
//Evolução do RAIO DE GIRAÇÃO
actualRG2 = md[z].rg;
eRG2 = aRG2 / idx;
previousRG2 = eRG2;
//Evolução do E
actualE = md[z].e;
eE = aE / idx;
previousE = eE;
//Evolução do U
actualU = md[z].U;
eU = aU / idx;
previousE = eU;
destinationFile.WriteLine(z + "\t" + md[z].mcSteps + "\t" + actualRG2 + "\t" + aRG2 + "\t" + eRG2 + "\t" + actualE + "\t" + aE + "\t" + eE + "\t" + actualU + "\t" + aU + "\t" + eU);
}
destinationFile.Flush();
destinationFile.Close();
souceFile.Dispose();
}
}
catch (Exception ex)
{
GICO.WriteLine(ex);
throw;
}
}
private static void Condicional(Guid guid, GridProteinFoldingEntities ctx, Process temp, ref BasicEnums.State state, ref RequestorInfo requestorInfo)
{
aspnet_Users user = new GridProteinFolding_MemberShipEntities().aspnet_Users.FirstOrDefault(u => u.UserId == temp.userId);
if (state == BasicEnums.State.Processing)
{
GICO.WriteLine(guid, String.Format("{0} {1} @ {2}({3})", DateTime.Now, "Processing", temp.macAddr, temp.machineName));
string message = " was started!";
if (temp.emailNotification == Convert.ToByte(BasicEnums.EmailNotification.Enviar))
{
SendMail(ctx, guid, message, user);
}
Expurg(guid, ctx);
}
if (state == BasicEnums.State.BULK)
{
#region BULK
GICO.WriteLine(guid, String.Format("{0} {1} @ {2}({3})", DateTime.Now, "BULK", temp.macAddr, temp.machineName));
//ExtendedDirectoryInfo dirBaseServer = new ExtendedDirectoryInfo(ConfigurationManager.AppSettings["dirBaseServer"].ToString());
//object[] parameters = new object[2];
//parameters[0] = dirBaseServer + @"\" + guid + @"\Seed";
//parameters[1] = guid.ToString();
//ctx.ExecuteStoreCommand("EXEC dbo.BunkFiles {0},{1}", parameters);
state = BasicEnums.State.ClearTempClient;
temp.status_id = Convert.ToByte(state);
ctx.SaveChanges();
#endregion
#region ClearTempServer
GICO.WriteLine(guid, String.Format("{0} {1} @ {2}({3})", DateTime.Now, "ClearTempServer", temp.macAddr, temp.machineName));
DeleteFileServer_temp(guid);
state = BasicEnums.State.Finalized;
temp.status_id = Convert.ToByte(state);
ctx.SaveChanges();
#endregion
}
//if (state == Enums.BasicEnums.State.Excel)
//{
// Applications objApplications = new Applications();
// GICO.Write("Excel..");
// objApplications.Excel(param);
// GICO.WriteLine("{0}:{1}", param.dataToProcess.Guid.ToString(), "DONE!");
// objApplications = null;
// state = Enums.BasicEnums.State.Origin;
// temp.status_id = Convert.ToByte(state);
// ctx.SaveChanges();
//}
//if (state == Enums.BasicEnums.State.Origin)
//{
// ProcessData(param.dataToProcess.Guid);
// Applications objApplications = new Applications();
// GICO.Write("Origin..");
// objApplications.Origin(param.dataToProcess.Guid);
// GICO.WriteLine("{0}:{1}", param.dataToProcess.Guid.ToString(), "DONE!");
// objApplications = null;
// state = Enums.BasicEnums.State.ClearTempClient;
// temp.status_id = Convert.ToByte(state);
// ctx.SaveChanges();
//}
//if (state == BasicEnums.State.ClearTempServer)
//{
// GICO.WriteLine(guid, String.Format("{0} {1}:", DateTime.Now, "ClearTempServer.."));
// DeleteFileServer_temp(guid);
// state = BasicEnums.State.Finalized;
// temp.status_id = Convert.ToByte(state);
// ctx.SaveChanges();
//}
//if (state == Enums.BasicEnums.State.Decrypt)
//{
// Applications objApplications = new Applications();
// GICO.Write("Decrypt..");
// objApplications.Decrypt(param);
// GICO.WriteLine("{0}:{1}", param.dataToProcess.Guid.ToString(), "DONE!");
// objApplications = null;
// state = Enums.BasicEnums.State.Web;
// temp.status_id = Convert.ToByte(state);
// ctx.SaveChanges();
//}
//if (state == Enums.BasicEnums.State.Web)
//{
// Applications objApplications = new Applications();
// GICO.Write("Web..");
// objApplications.Web(param);
// GICO.WriteLine("{0}:{1}", param.dataToProcess.Guid.ToString(), "DONE!");
// objApplications = null;
// state = Enums.BasicEnums.State.Finalized;
// temp.status_id = Convert.ToByte(state);
// ctx.SaveChanges();
//}
if (state == BasicEnums.State.Finalized)
{
GICO.WriteLine(guid, String.Format("{0} {1} @ {2}({3})", DateTime.Now, "Finalized", temp.macAddr, temp.machineName));
if (temp.emailNotification == Convert.ToByte(BasicEnums.EmailNotification.Enviar))
{
string message = "was completed!";
SendMail(ctx, guid, message, user);
}
}
}
