public TermScoreCalculator(ref GOTerms gt, ref ResultParser rp)
{
this.gt = gt;
resultParser = rp;
//Find root term for the 3 GO namespaces
//Molecular function, Celular Component, Biological Process
List <string> topMostNodesIDs = gt.findTopMostNodes();
foreach (string s in topMostNodesIDs)
{
Term termToAdd = gt.getTermByID(s);
topMostNodes.Add(termToAdd);
}
BuildResultsInPopulationCache();
}
private void buttonVerifyExperimentalData_Click(object sender, EventArgs e)
{
if (openFileDialog1.ShowDialog() == DialogResult.Cancel)
{
return;
}
ResultParser resultParser = new ResultParser();
resultParser.ParseTrendQuestACFoldOrIndex(openFileDialog1.FileName);
int failCounter = 0;
int idsProcessedCounter = 0;
List <string> failedIDs = new List <string>();
foreach (KeyValuePair <string, double> r in resultParser.TheResults)
{
try
{
idsProcessedCounter++;
}
catch
{
failCounter++;
failedIDs.Add(r.Key);
}
}
richTextBoxLog.AppendText("Total IDs processed =" + idsProcessedCounter.ToString() + "\n");
richTextBoxLog.AppendText("FailCounter = " + failCounter.ToString() + "\n");
for (int i = 0; i < failedIDs.Count; i++)
{
int a = i + 1;
richTextBoxLog.AppendText(a.ToString() + ": " + failedIDs[i] + "\n");
}
}
