/// <summary>
/// Creates a fqFile_component_details class from the core information that is best still stored within the programs memory.
/// These classes populate a dictionary within the fqfilemap class where the component filename is their key.
/// </summary>
/// <param name="component">The component who's details are to be stored</param>
public void BuildFqFileMap(IFqFile component)
{
FqFile_Component_Details componentDetails = new FqFile_Component_Details();
componentDetails.ContructComponentDetails(component);
fqFileMap.GetFqFileComponentDetailsMap()[component.getFileName()] = componentDetails;
}
/// <summary>
/// Displays details of the components the file was broken into.
/// </summary>
public void DisplayComponentDetais()
{
foreach (String dir in fqMap.getFileComponentDirectories())
{
FqFile_Component_Details componentDetails = fqMap.GetFqFileComponentDetailsMap()[dir];
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Bold);
textBox.AppendText("\t[" + componentDetails.getGraphName() + " CONTENTS]\n\n");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tTotal Sequences: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.TotalSequences.ToString());
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\t\tTotal Nucleotides: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.TotalNucs.ToString() + "\n\n");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tCytosine Count: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.CCount.ToString());
textBox.AppendText("\t" + Math.Round(componentDetails.CPercent, 2).ToString() + "(%) \n");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tGuanine Count: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.GCount.ToString());
textBox.AppendText("\t" + Math.Round(componentDetails.GPercent, 2).ToString() + "(%) \n");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tFailed Read Count: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.NCount.ToString());
textBox.AppendText("\t" + Math.Round(componentDetails.NPercent, 4).ToString() + "(%) \n\n");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tSmallest Sequence Length: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.MinSeqSize.ToString());
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tLargest Sequence Length: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.MaxSeqSize.ToString() + "\n\n");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\tNucleotides Cleaned: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.NucleotidesCleaned.ToString());
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText("\t\tSequences Removed: ");
textBox.SelectionFont = new Font(textBox.Font.ToString(), 8, FontStyle.Regular);
textBox.AppendText(componentDetails.SequencesRemoved.ToString() + "\n\n");
}
}
/// <summary>
/// Changes the chart type via this combo box
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void Charts_Combo_Selector_SelectedIndexChanged(object sender, EventArgs e)
{
if (FastqController.CONTROLLER_STATE == FastqController.FastqControllerState.STATE_READY)
{
FqFileMap map = FastqController.getInstance().GetFqFileMap();
if (map != null)
{
SetGraphicTrackBarDataSourceSize();
List <String> componentDetails = map.getFileComponentDirectories();
Dictionary <string, FqFile_Component_Details> componentMap = map.GetFqFileComponentDetailsMap();
if (componentDetails != null && componentMap != null)
{
int index = graphicsTrackBar.Value;
FqFile_Component_Details details;
String chartType = Charts_Combo_Selector.SelectedValue.ToString();
if (chartType.Equals(FastqGUI_Charts.FastqChartTypes.PerBaseSequenceStatistics.ToString()))
{
details = componentMap[componentDetails[index]];
drawChart(details, chartType);
}
else
{
if (index == 0)
{
details = FastqController.getInstance().GetFqFileMap().GlobalDetails;
drawChart(details, chartType);
}
else if (index > 0)
{
details = componentMap[componentDetails[index - 1]];
drawChart(details, chartType);
}
}
}
}
}
}
