private InsertWorkItemCommand CreateWorkItemCommand(WorkItem workItem, DicomProcessingResult result, DicomMessageBase file, bool duplicateFile, string duplicateFileName)
{
InsertWorkItemCommand insertWorkItemCommand;
if (duplicateFile)
{
insertWorkItemCommand = workItem != null
? new InsertWorkItemCommand(workItem, result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid,
duplicateFileName)
: new InsertWorkItemCommand(_context.CreateRequest(file),
_context.CreateProgress(), result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid,
duplicateFileName);
}
else
{
insertWorkItemCommand = workItem != null
? new InsertWorkItemCommand(workItem, result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid)
: new InsertWorkItemCommand(_context.CreateRequest(file),
_context.CreateProgress(), result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid);
}
insertWorkItemCommand.ExpirationDelaySeconds = _context.ExpirationDelaySeconds;
return insertWorkItemCommand;
}
public void AuditFailure(DicomProcessingResult result)
{
// This primarily happens with DICOMDIR files
if (string.IsNullOrEmpty(result.StudyInstanceUid))
return;
if (!_context.FailedStudyAudits.ContainsKey(result.StudyInstanceUid))
{
var auditedInstances = new AuditedInstances();
auditedInstances.AddInstance(result.PatientId, result.PatientsName,
result.StudyInstanceUid);
AuditHelper.LogImportStudies(auditedInstances, _context.AuditSource, EventResult.MajorFailure);
_context.FailedStudyAudits.Add(result.StudyInstanceUid, result.StudyInstanceUid);
}
}
public void PublishLocal(ICollection <DicomFile> files)
{
if (files == null || files.Count == 0)
{
return;
}
var configuration = GetServerConfiguration();
var context = new ImportStudyContext(configuration.AETitle, StudyStore.GetConfiguration(), EventSource.CurrentUser);
var utility = new ImportFilesUtility(context);
try
{
DicomProcessingResult failureResult = null;
foreach (var file in files)
{
var importResult = utility.Import(file, BadFileBehaviourEnum.Ignore, FileImportBehaviourEnum.Save);
if (importResult.DicomStatus != DicomStatuses.Success)
{
Platform.Log(LogLevel.Warn, "Unable to import published file: {0}", importResult.ErrorMessage);
failureResult = importResult;
}
}
if (failureResult != null)
{
throw new ApplicationException(failureResult.ErrorMessage);
}
utility.PulseStudyWorkItems();
}
catch (Exception ex)
{
var message = string.Format("Failed to import files");
throw new DicomFilePublishingException(message, ex);
}
}
public bool CompleteStream(Dicom.Network.DicomServer server, ServerAssociationParameters assoc, byte presentationId, DicomMessage message)
{
DicomProcessingResult result;
var importer = new ImportFilesUtility(_importContext);
if (_rejectFile)
{
result = new DicomProcessingResult();
result.SetError(DicomStatuses.StorageStorageOutOfResources, string.Format("Import failed, disk space usage exceeded"));
string studyInstanceUid = message.DataSet[DicomTags.StudyInstanceUid].GetString(0, string.Empty);
WorkItem workItem;
lock (_importContext.StudyWorkItemsSyncLock)
_importContext.StudyWorkItems.TryGetValue(studyInstanceUid, out workItem);
importer.InsertFailedWorkItemUid(workItem, message, result);
_importContext.FatalError = true;
importer.AuditFailure(result);
Platform.Log(LogLevel.Warn, "Failure receiving sop, out of disk space: {0}", message.AffectedSopInstanceUid);
server.SendCStoreResponse(presentationId, message.MessageId, message.AffectedSopInstanceUid, result.DicomStatus);
return true;
}
try
{
if (_fileStream != null)
{
_fileStream.Flush(true);
_fileStream.Close();
_fileStream.Dispose();
_fileStream = null;
}
// Convert to file to pass in the source filename
var theFile = new DicomFile(message,_sourceFilename);
result = importer.Import(theFile, BadFileBehaviourEnum.Delete, FileImportBehaviourEnum.Move);
if (result.Successful)
{
if (!String.IsNullOrEmpty(result.AccessionNumber))
Platform.Log(LogLevel.Info, "Received SOP Instance {0} from {1} to {2} (A#:{3} StudyUid:{4})",
result.SopInstanceUid, assoc.CallingAE, assoc.CalledAE, result.AccessionNumber,
result.StudyInstanceUid);
else
Platform.Log(LogLevel.Info, "Received SOP Instance {0} from {1} to {2} (StudyUid:{3})",
result.SopInstanceUid, assoc.CallingAE, assoc.CalledAE,
result.StudyInstanceUid);
}
}
catch (Exception e)
{
result = new DicomProcessingResult { DicomStatus = DicomStatuses.ProcessingFailure, ErrorMessage = e.Message };
}
if (!result.Successful)
{
Platform.Log(LogLevel.Warn, "Failure importing sop: {0}", result.ErrorMessage);
}
CleanupFile();
server.SendCStoreResponse(presentationId, message.MessageId, message.AffectedSopInstanceUid, result.DicomStatus);
return true;
}
private InsertWorkItemCommand CreateWorkItemCommand(WorkItem workItem, DicomProcessingResult result, DicomMessageBase file, bool duplicateFile, string duplicateFileName)
{
InsertWorkItemCommand insertWorkItemCommand;
if (duplicateFile)
{
insertWorkItemCommand = workItem != null
? new InsertWorkItemCommand(workItem, result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid,
duplicateFileName)
: new InsertWorkItemCommand(_context.CreateRequest(file),
_context.CreateProgress(), result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid,
duplicateFileName);
}
else
{
insertWorkItemCommand = workItem != null
? new InsertWorkItemCommand(workItem, result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid)
: new InsertWorkItemCommand(_context.CreateRequest(file),
_context.CreateProgress(), result.StudyInstanceUid,
result.SeriesInstanceUid, result.SopInstanceUid);
}
insertWorkItemCommand.ExpirationDelaySeconds = _context.ExpirationDelaySeconds;
return insertWorkItemCommand;
}
private void Process(DicomMessageBase message, FileImportBehaviourEnum fileImportBehaviour, WorkItem workItem, DicomProcessingResult result)
{
result.Initialize();
// Use the command processor for rollback capabilities.
using (var commandProcessor = new ViewerCommandProcessor(String.Format("Processing Sop Instance {0}", result.SopInstanceUid)))
{
try
{
var studyLocation = new StudyLocation(result.StudyInstanceUid);
String destinationFile = studyLocation.GetSopInstancePath(result.SeriesInstanceUid, result.SopInstanceUid);
DicomFile file = ConvertToDicomFile(message, destinationFile, _context.SourceAE);
// Create the Study Folder, if need be
commandProcessor.AddCommand(new CreateDirectoryCommand(studyLocation.StudyFolder));
bool duplicateFile = false;
string dupName = null;
if (File.Exists(destinationFile))
{
// TODO (CR Jun 2012): Shouldn't the commands themselves make this decision at the time
// the file is being saved? Otherwise, what happens if the same SOP were being saved 2x simultaneously.
// I know the odds are low, but just pointing it out.
duplicateFile = true;
dupName = Guid.NewGuid().ToString() + ".dcm";
destinationFile = Path.Combine(Path.GetDirectoryName(destinationFile) ?? string.Empty, dupName);
}
if (fileImportBehaviour == FileImportBehaviourEnum.Move)
{
commandProcessor.AddCommand(CommandFactory.CreateRenameFileCommand(file.Filename, destinationFile, true));
}
else if (fileImportBehaviour == FileImportBehaviourEnum.Copy)
{
commandProcessor.AddCommand(CommandFactory.CreateCopyFileCommand(file.Filename, destinationFile, true));
}
else if (fileImportBehaviour == FileImportBehaviourEnum.Save)
{
commandProcessor.AddCommand(CommandFactory.CreateSaveDicomFileCommand(destinationFile, file, true));
}
var insertWorkItemCommand = CreateWorkItemCommand(workItem, result, file, duplicateFile, dupName);
commandProcessor.AddCommand(insertWorkItemCommand);
if (commandProcessor.Execute())
{
result.DicomStatus = DicomStatuses.Success;
IncrementTotalFiles(insertWorkItemCommand, result.StudyInstanceUid);
}
else
{
if (commandProcessor.FailureException is ChangeConflictException
|| commandProcessor.FailureException is SqlCeLockTimeoutException)
result.RetrySuggested = true; // Change conflict or lock timeout may work if we just retry
Platform.Log(LogLevel.Warn, "Failure Importing file: {0}", file.Filename);
string failureMessage = String.Format(
"Failure processing message: {0}. Sending failure status.",
commandProcessor.FailureReason);
result.SetError(DicomStatuses.ProcessingFailure, failureMessage);
// processor already rolled back
}
}
catch (Exception e)
{
Platform.Log(LogLevel.Error, e, "Unexpected exception when {0}. Rolling back operation.", commandProcessor.Description);
commandProcessor.Rollback();
result.SetError(result.DicomStatus ?? DicomStatuses.ProcessingFailure, e.Message);
}
}
}
public void AuditFailure(DicomProcessingResult result)
{
// This primarily happens with DICOMDIR files
if (string.IsNullOrEmpty(result.StudyInstanceUid))
return;
if (!_context.FailedStudyAudits.ContainsKey(result.StudyInstanceUid))
{
var auditedInstances = new AuditedInstances();
auditedInstances.AddInstance(result.PatientId, result.PatientsName,
result.StudyInstanceUid);
AuditHelper.LogImportStudies(auditedInstances, _context.AuditSource, EventResult.MajorFailure);
_context.FailedStudyAudits.Add(result.StudyInstanceUid, result.StudyInstanceUid);
}
}
public void InsertFailedWorkItemUid(WorkItem workItem, DicomMessageBase message, DicomProcessingResult result, int tryCount = 1)
{
if (tryCount < 0)
tryCount = 1;
int tries = 0;
while (tries++ < tryCount)
{
using (var commandProcessor = new ViewerCommandProcessor(String.Format("Processing Sop Instance {0}", result.SopInstanceUid)))
{
var fileName = Guid.NewGuid().ToString() + ".dcm";
var insertWorkItemCommand = CreateWorkItemCommand(workItem, result, message, true, fileName);
//Fail the Uid immediately, since we know the file isn't there.
insertWorkItemCommand.WorkItemUid.Failed = true;
commandProcessor.AddCommand(insertWorkItemCommand);
if (commandProcessor.Execute())
{
IncrementTotalFiles(insertWorkItemCommand, result.StudyInstanceUid, result.ErrorMessage);
return;
}
}
Thread.Sleep(10);
}
Platform.Log(LogLevel.Error, "Failed to insert failed work item UID after {0} attempts (Sop Instance UID={1}).", tries, result.SopInstanceUid);
}
/// <summary>
/// Imports the specified <see cref="DicomMessageBase"/> object into the system.
/// The object will be inserted into the <see cref="WorkItem"/> for processing
/// </summary>
/// <param name="message">The DICOM object to be imported.</param>
/// <param name="badFileBehavior"> </param>
/// <param name="fileImportBehaviour"> </param>
/// <returns>An instance of <see cref="DicomProcessingResult"/> that describes the result of the processing.</returns>
/// <exception cref="DicomDataException">Thrown when the DICOM object contains invalid data</exception>
public DicomProcessingResult Import(DicomMessageBase message, BadFileBehaviourEnum badFileBehavior, FileImportBehaviourEnum fileImportBehaviour)
{
Platform.CheckForNullReference(message, "message");
String studyInstanceUid = message.DataSet[DicomTags.StudyInstanceUid].GetString(0, string.Empty);
String seriesInstanceUid = message.DataSet[DicomTags.SeriesInstanceUid].GetString(0, string.Empty);
String sopInstanceUid = message.DataSet[DicomTags.SopInstanceUid].GetString(0, string.Empty);
String accessionNumber = message.DataSet[DicomTags.AccessionNumber].GetString(0, string.Empty);
String patientsName = message.DataSet[DicomTags.PatientsName].GetString(0, string.Empty);
String patientId = message.DataSet[DicomTags.PatientId].GetString(0, string.Empty);
var result = new DicomProcessingResult
{
Successful = true,
StudyInstanceUid = studyInstanceUid,
SeriesInstanceUid = seriesInstanceUid,
SopInstanceUid = sopInstanceUid,
AccessionNumber = accessionNumber,
PatientsName = patientsName,
PatientId = patientId,
};
WorkItem workItem;
lock (_context.StudyWorkItemsSyncLock)
_context.StudyWorkItems.TryGetValue(studyInstanceUid, out workItem);
try
{
Validate(message);
}
catch (DicomDataException e)
{
result.SetError(DicomStatuses.ProcessingFailure, e.Message);
AuditFailure(result);
return result;
}
if (workItem != null)
{
if (workItem.Status == WorkItemStatusEnum.Deleted || workItem.Status == WorkItemStatusEnum.DeleteInProgress || workItem.Status == WorkItemStatusEnum.Canceled || workItem.Status == WorkItemStatusEnum.Canceling)
{
// TODO Marmot (CR June 2012): not DicomStatuses.Cancel?
result.SetError(DicomStatuses.StorageStorageOutOfResources, "Canceled by user");
AuditFailure(result);
return result;
}
}
if (LocalStorageMonitor.IsMaxUsedSpaceExceeded)
{
//The input to this method is a VALID DICOM file, and we know we should have stored it if it weren't for
//the fact that we're out of disk space. So, we insert the work item UID anyway, knowing that it'll cause
//the work item to fail. In fact, that's why we're doing it.
result.SetError(DicomStatuses.StorageStorageOutOfResources, string.Format("Import failed, disk space usage exceeded"));
InsertFailedWorkItemUid(workItem, message, result);
_context.FatalError = true;
AuditFailure(result);
return result;
}
Process(message, fileImportBehaviour, workItem, result);
if (result.DicomStatus != DicomStatuses.Success)
{
if (result.RetrySuggested)
{
Platform.Log(LogLevel.Warn,
"Failure importing file with retry suggested, retrying Import of file: {0}",
sopInstanceUid);
Process(message, fileImportBehaviour, workItem, result);
}
}
if (result.DicomStatus != DicomStatuses.Success)
{
//The input to this method is a VALID DICOM file, and we know we should have stored it if it weren't for
//the fact that we're out of disk space. So, we insert the work item UID anyway, knowing that it'll cause
//the work item to fail. In fact, that's why we're doing it.
InsertFailedWorkItemUid(workItem, message, result);
AuditFailure(result);
}
return result;
}
private void Process(DicomMessageBase message, FileImportBehaviourEnum fileImportBehaviour, WorkItem workItem, DicomProcessingResult result)
{
result.Initialize();
// Use the command processor for rollback capabilities.
using (var commandProcessor = new ViewerCommandProcessor(String.Format("Processing Sop Instance {0}", result.SopInstanceUid)))
{
try
{
var studyLocation = new StudyLocation(result.StudyInstanceUid);
String destinationFile = studyLocation.GetSopInstancePath(result.SeriesInstanceUid, result.SopInstanceUid);
DicomFile file = ConvertToDicomFile(message, destinationFile, _context.SourceAE);
// Create the Study Folder, if need be
commandProcessor.AddCommand(new CreateDirectoryCommand(studyLocation.StudyFolder));
bool duplicateFile = false;
string dupName = null;
if (File.Exists(destinationFile))
{
// TODO (CR Jun 2012): Shouldn't the commands themselves make this decision at the time
// the file is being saved? Otherwise, what happens if the same SOP were being saved 2x simultaneously.
// I know the odds are low, but just pointing it out.
duplicateFile = true;
dupName = Guid.NewGuid().ToString() + ".dcm";
destinationFile = Path.Combine(Path.GetDirectoryName(destinationFile), dupName);
}
if (fileImportBehaviour == FileImportBehaviourEnum.Move)
{
commandProcessor.AddCommand(new RenameFileCommand(file.Filename, destinationFile, true));
}
else if (fileImportBehaviour == FileImportBehaviourEnum.Copy)
{
commandProcessor.AddCommand(new CopyFileCommand(file.Filename, destinationFile, true));
}
else if (fileImportBehaviour == FileImportBehaviourEnum.Save)
{
commandProcessor.AddCommand(new SaveDicomFileCommand(destinationFile, file, true));
}
var insertWorkItemCommand = CreateWorkItemCommand(workItem, result, file, duplicateFile, dupName);
commandProcessor.AddCommand(insertWorkItemCommand);
if (commandProcessor.Execute())
{
result.DicomStatus = DicomStatuses.Success;
IncrementTotalFiles(insertWorkItemCommand, result.StudyInstanceUid);
}
else
{
if (commandProcessor.FailureException is ChangeConflictException
|| commandProcessor.FailureException is SqlCeLockTimeoutException)
result.RetrySuggested = true; // Change conflict or lock timeout may work if we just retry
Platform.Log(LogLevel.Warn, "Failure Importing file: {0}", file.Filename);
string failureMessage = String.Format(
"Failure processing message: {0}. Sending failure status.",
commandProcessor.FailureReason);
result.SetError(DicomStatuses.ProcessingFailure, failureMessage);
// processor already rolled back
}
}
catch (Exception e)
{
Platform.Log(LogLevel.Error, e, "Unexpected exception when {0}. Rolling back operation.", commandProcessor.Description);
commandProcessor.Rollback();
result.SetError(result.DicomStatus ?? DicomStatuses.ProcessingFailure, e.Message);
}
}
}
public void InsertFailedWorkItemUid(WorkItem workItem, DicomMessageBase message, DicomProcessingResult result, int tryCount = 1)
{
if (tryCount < 0)
tryCount = 1;
int tries = 0;
while (tries++ < tryCount)
{
using (var commandProcessor = new ViewerCommandProcessor(String.Format("Processing Sop Instance {0}", result.SopInstanceUid)))
{
var fileName = Guid.NewGuid().ToString() + ".dcm";
var insertWorkItemCommand = CreateWorkItemCommand(workItem, result, message, true, fileName);
//Fail the Uid immediately, since we know the file isn't there.
insertWorkItemCommand.WorkItemUid.Failed = true;
commandProcessor.AddCommand(insertWorkItemCommand);
if (commandProcessor.Execute())
{
IncrementTotalFiles(insertWorkItemCommand, result.StudyInstanceUid, result.ErrorMessage);
return;
}
}
Thread.Sleep(10);
}
Platform.Log(LogLevel.Error, "Failed to insert failed work item UID after {0} attempts (Sop Instance UID={1}).", tries, result.SopInstanceUid);
}
/// <summary>
/// Imports the specified <see cref="DicomMessageBase"/> object into the system.
/// The object will be inserted into the <see cref="WorkItem"/> for processing
/// </summary>
/// <param name="message">The DICOM object to be imported.</param>
/// <param name="badFileBehavior"> </param>
/// <param name="fileImportBehaviour"> </param>
/// <returns>An instance of <see cref="DicomProcessingResult"/> that describes the result of the processing.</returns>
/// <exception cref="DicomDataException">Thrown when the DICOM object contains invalid data</exception>
public DicomProcessingResult Import(DicomMessageBase message, BadFileBehaviourEnum badFileBehavior, FileImportBehaviourEnum fileImportBehaviour)
{
Platform.CheckForNullReference(message, "message");
String studyInstanceUid = message.DataSet[DicomTags.StudyInstanceUid].GetString(0, string.Empty);
String seriesInstanceUid = message.DataSet[DicomTags.SeriesInstanceUid].GetString(0, string.Empty);
String sopInstanceUid = message.DataSet[DicomTags.SopInstanceUid].GetString(0, string.Empty);
String accessionNumber = message.DataSet[DicomTags.AccessionNumber].GetString(0, string.Empty);
String patientsName = message.DataSet[DicomTags.PatientsName].GetString(0, string.Empty);
String patientId = message.DataSet[DicomTags.PatientId].GetString(0, string.Empty);
var result = new DicomProcessingResult
{
Successful = true,
StudyInstanceUid = studyInstanceUid,
SeriesInstanceUid = seriesInstanceUid,
SopInstanceUid = sopInstanceUid,
AccessionNumber = accessionNumber,
PatientsName = patientsName,
PatientId = patientId,
};
WorkItem workItem;
lock (_context.StudyWorkItemsSyncLock)
_context.StudyWorkItems.TryGetValue(studyInstanceUid, out workItem);
try
{
Validate(message);
}
catch (DicomDataException e)
{
result.SetError(DicomStatuses.ProcessingFailure, e.Message);
AuditFailure(result);
return result;
}
if (workItem != null)
{
if (workItem.Status == WorkItemStatusEnum.Deleted || workItem.Status == WorkItemStatusEnum.DeleteInProgress || workItem.Status == WorkItemStatusEnum.Canceled || workItem.Status == WorkItemStatusEnum.Canceling)
{
// TODO Marmot (CR June 2012): not DicomStatuses.Cancel?
result.SetError(DicomStatuses.StorageStorageOutOfResources, "Canceled by user");
AuditFailure(result);
return result;
}
}
if (LocalStorageMonitor.IsMaxUsedSpaceExceeded)
{
//The input to this method is a VALID DICOM file, and we know we should have stored it if it weren't for
//the fact that we're out of disk space. So, we insert the work item UID anyway, knowing that it'll cause
//the work item to fail. In fact, that's why we're doing it.
result.SetError(DicomStatuses.StorageStorageOutOfResources, string.Format("Import failed, disk space usage exceeded"));
InsertFailedWorkItemUid(workItem, message, result);
_context.FatalError = true;
AuditFailure(result);
return result;
}
Process(message, fileImportBehaviour, workItem, result);
if (result.DicomStatus != DicomStatuses.Success)
{
if (result.RetrySuggested)
{
Platform.Log(LogLevel.Warn,
"Failure importing file with retry suggested, retrying Import of file: {0}",
sopInstanceUid);
Process(message, fileImportBehaviour, workItem, result);
}
}
if (result.DicomStatus != DicomStatuses.Success)
{
//The input to this method is a VALID DICOM file, and we know we should have stored it if it weren't for
//the fact that we're out of disk space. So, we insert the work item UID anyway, knowing that it'll cause
//the work item to fail. In fact, that's why we're doing it.
InsertFailedWorkItemUid(workItem, message, result);
AuditFailure(result);
}
return result;
}
