public void ValidatePadenaStep1BuildKmersWithRCReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaBuildKmers(Constants.OneLineReadsWithRCNode, false);
}
}
public void ValidatePadenaStep1BuildKmersForViralGenomeReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaBuildKmers(Constants.ViralGenomeReadsNode, true);
}
}
public void ValidatePadenaStep6PairedReadsForSpecialCharsSeqId()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.ReadsWithSpecialCharsNode);
}
}
public void ValidatePadenaStep3UndangleGraphForViralGenomeReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaUnDangleGraph(Constants.ViralGenomeReadsNode, true, true);
}
}
public void ValidatePadenaStep6PairedReadsForSeqIDContainsX1Y1()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.OneLineReadsForPairedReadsNode);
}
}
public void ValidatePadenaStep6MapReadsToContigForUsingReverseComplementContig()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateMapReadsToContig(Constants.MapPairedReadsToContigForReverseComplementContigsNode,
true);
}
}
public void ValidatePadenaStep6MapReadsToContigForRightSideGenerator()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateMapReadsToContig(Constants.MapPairedReadsToContigForRightSideContigGeneratorNode,
false);
}
}
public void ValidatePadenaStep6PairedReadsForSeqsWithoutAnyID()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.ReadsWithoutAnySeqIdNode);
}
}
public void ValidatePadenaStep3UndangleGraphWithMultipleDanglingLinks()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaUnDangleGraph(Constants.ReadsWithMultipleDanglingLinksNode, false, false);
}
}
public void ValidatePadenaStep4RemoveErrorNodes()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateRedundantPathPurgerCtor(Constants.OneLineStep4ReadsNode, false);
}
}
public void ValidatePadenaStep5BuildContigsForViralGenomeReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateDe2thisBuildContigs(Constants.ViralGenomeReadsNode, true);
}
}
public void ValidatePadenaStep4RemoveRedundancyWithMultipleBubbles()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaRemoveRedundancy(Constants.ReadsWithMultipleBubblesNode, false, false);
}
}
public void ValidatePadenaStep4RemoveRedundancyWithSmallSizeReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaRemoveRedundancy(Constants.Step4ReadsWithSmallSize, false, true);
}
}
public void ValidatePadenaStep4RemoveRedundancyWithClusters()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaRemoveRedundancy(Constants.OneLineReadsWithClustersNode, true, false);
}
}
public void ValidatePadenaStep4RemoveRedundancyForViralGenomeReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaRemoveRedundancy(Constants.ViralGenomeReadsNode, true, true);
}
}
public void ValidatePadenaStep3RemoveErrorNodesForSmallSizeReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaRemoveErrorNodes(Constants.ViralGenomeReadsNode);
}
}
public void ValidatePadenaStep6PairedReadsForMixedFormatReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.ReadsWithDotsNode);
}
}
public void ValidatePadenaStep6PairedReadsForNumericLibraryName()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.ReadsWith10KAnd50KAnd100KlibraryNode);
}
}
public void ValidatePadenaStep6PairedReadsForDifferentLibrary()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.ReadsWith2KlibraryNode);
}
}
public void ValidatePadenaStep6GetLibraryinformation()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.GetLibraryInformation(Constants.GetLibraryInformationNode);
}
}
public void ValidatePadenaStep5BuildContigsWithClusters()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateDe2thisBuildContigs(Constants.OneLineReadsWithClustersNode, false);
}
}
public void ValidatePadenaStep3UndangleGraphWithClusters()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaUnDangleGraph(Constants.OneLineReadsWithClustersAfterDangling, false, false);
}
}
public void ValidatePadenaStep6Libraryinformation()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.AddLibraryInformation(Constants.AddX1AndY1FormatPairedReadsNode, true);
}
}
public void ValidatePadenaStep5BuildContigsForSmallSizeChromosomes()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateDe2thisBuildContigs(Constants.SmallChromosomeReadsNode, true);
}
}
public void ValidatePadenaStep6MapReadsToContigForClustalW()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateMapReadsToContig(Constants.MapPairedReadsToContigForClustalWContigsNode, true);
}
}
public void ValidatePadenaStep5SimpleContigBuilderBuildContigsForSmallSizeRC()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateSimpleContigBuilderBuild(Constants.ChromosomeReads, true);
}
}
public void ValidatePadenaStep6MapReadsToContigForOneSeqReadAndOtherRevComp()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateMapReadsToContig(Constants.MapPairedReadsToContigForSeqAndRevCompNode,
false);
}
}
public void ValidatePadenaStep6PairedReadsForSeqIDWithDotsBetween()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePairedReads(Constants.ReadsWithDotsBetweenSeqIdNode);
}
}
public void ValidatePadenaStep6FilterPairedReadsWithRevReadsNotSupportOrientation()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidateFilterPaired(Constants.FilterPairedReadContigsForRevOrientationNode, true);
}
}
public void ValidatePadenaStep3UndangleGraphWithRCReads()
{
using (PadenaP1Test testObj = new PadenaP1Test())
{
testObj.ValidatePadenaUnDangleGraph(Constants.OneLineWithRCStep2Node, true, false);
}
}