/// <summary>
/// Validates SearchMatch() with different inputs.
/// </summary>
/// <param name="nodeName">Parent Node from Xml.</param>
void ValidateSearchMatch(string nodeName)
{
string referenceSequence = string.Empty;
string querySequence = string.Empty;
string seqAlp = this.utilityObj.xmlUtil.GetTextValue(nodeName,
Constants.AlphabetNameNode);
// Gets the reference sequence from the configurtion file
referenceSequence = this.utilityObj.xmlUtil.GetTextValue(nodeName,
Constants.SequenceNode);
querySequence = this.utilityObj.xmlUtil.GetTextValue(nodeName,
Constants.SearchSequenceNode);
seqAlp = this.utilityObj.xmlUtil.GetTextValue(nodeName,
Constants.SearchSequenceAlphabetNode);
IEnumerable<Match> matches = null;
string mumLength = this.utilityObj.xmlUtil.GetTextValue(nodeName, Constants.MUMLengthNode);
Sequence referenceSequenceForMatches = new Sequence(Utility.GetAlphabet(seqAlp), referenceSequence);
MultiWaySuffixTree suffixTree = new MultiWaySuffixTree(referenceSequenceForMatches);
suffixTree.MinLengthOfMatch = long.Parse(mumLength, null);
Sequence querySequenceForMatches = new Sequence(Utility.GetAlphabet(seqAlp), querySequence);
matches = suffixTree.SearchMatches(querySequenceForMatches);
// Validates the Unique Matches.
ApplicationLog.WriteLine("MUMmer BVT : Validating the Unique Matches");
Assert.IsTrue(this.ValidateUniqueMatches(matches, nodeName, LISParameters.FindUniqueMatches));
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"MUMmer BVT : Successfully validated the all the unique matches for the sequence '{0}' and '{1}'.",
referenceSequence, querySequence));
}
