public void BootstrapConstructorTest3()
{
Accord.Math.Tools.SetupGenerator(0);
// This is a sample code on how to use 0.632 Bootstrap
// to assess the performance of Support Vector Machines.
// Consider the example binary data. We will be trying
// to learn a XOR problem and see how well does SVMs
// perform on this data.
double[][] data =
{
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
};
int[] xor = // result of xor for the sample input data
{
-1, 1,
1, -1,
-1, 1,
1, -1,
-1, 1,
1, -1,
-1, 1,
1, -1,
};
// Create a new Bootstrap algorithm passing the set size and the number of resamplings
var bootstrap = new Bootstrap(size: data.Length, subsamples: 50);
// Define a fitting function using Support Vector Machines. The objective of this
// function is to learn a SVM in the subset of the data indicated by the bootstrap.
bootstrap.Fitting = delegate(int[] indicesTrain, int[] indicesValidation)
{
// The fitting function is passing the indices of the original set which
// should be considered training data and the indices of the original set
// which should be considered validation data.
// Lets now grab the training data:
var trainingInputs = data.Submatrix(indicesTrain);
var trainingOutputs = xor.Submatrix(indicesTrain);
// And now the validation data:
var validationInputs = data.Submatrix(indicesValidation);
var validationOutputs = xor.Submatrix(indicesValidation);
// Create a Kernel Support Vector Machine to operate on the set
var svm = new KernelSupportVectorMachine(new Polynomial(2), 2);
// Create a training algorithm and learn the training data
var smo = new SequentialMinimalOptimization(svm, trainingInputs, trainingOutputs);
double trainingError = smo.Run();
// Now we can compute the validation error on the validation data:
double validationError = smo.ComputeError(validationInputs, validationOutputs);
// Return a new information structure containing the model and the errors achieved.
return new BootstrapValues(trainingError, validationError);
};
// Compute the bootstrap estimate
var result = bootstrap.Compute();
// Finally, access the measured performance.
double trainingErrors = result.Training.Mean;
double validationErrors = result.Validation.Mean;
// And compute the 0.632 estimate
double estimate = result.Estimate;
Assert.AreEqual(50, bootstrap.B);
Assert.AreEqual(0, trainingErrors);
Assert.AreEqual(0.021428571428571429, validationErrors);
Assert.AreEqual(50, bootstrap.Subsamples.Length);
Assert.AreEqual(0.013542857142857143, estimate);
}
private void Test_Load(object sender, EventArgs e)
{
// TODO: This line of code loads data into the 'diabetesDataSetB.ContinuousData' table. You can move, or remove it, as needed.
this.continuousDataTableAdapter.Fill(this.diabetesDataSetB.ContinuousData);
// This is a sample code on how to use Cross-Validation
// to access the performance of Support Vector Machines.
// Consider the example binary data. We will be trying
// to learn a XOR problem and see how well does SVMs
// perform on this data.
double[][] data =
{
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
};
int[] xor = // result of xor for the sample input data
{
-1, 1,
1, -1,
-1, 1,
1, -1,
-1, 1,
1, -1,
-1, 1,
1, -1,
};
// Create a new Cross-validation algorithm passing the data set size and the number of folds
var crossvalidation = new CrossValidation<KernelSupportVectorMachine>(size: data.Length, folds: 3);
// Define a fitting function using Support Vector Machines. The objective of this
// function is to learn a SVM in the subset of the data dicted by cross-validation.
crossvalidation.Fitting = delegate(int k, int[] indicesTrain, int[] indicesValidation)
{
// The fitting function is passing the indices of the original set which
// should be considered training data and the indices of the original set
// which should be considered validation data.
// Lets now grab the training data:
var trainingInputs = data.Submatrix(indicesTrain);
var trainingOutputs = xor.Submatrix(indicesTrain);
// And now the validation data:
var validationInputs = data.Submatrix(indicesValidation);
var validationOutputs = xor.Submatrix(indicesValidation);
// Create a Kernel Support Vector Machine to operate on the set
var svm = new KernelSupportVectorMachine(new Polynomial(2), 2);
// Create a training algorithm and learn the training data
var smo = new SequentialMinimalOptimization(svm, trainingInputs, trainingOutputs);
double trainingError = smo.Run();
// Now we can compute the validation error on the validation data:
double validationError = smo.ComputeError(validationInputs, validationOutputs);
// Return a new information structure containing the model and the errors achieved.
return new CrossValidationValues<KernelSupportVectorMachine>(svm, trainingError, validationError);
};
//crossvalidation.CreatePartitions(2, data,out xor);
// Compute the cross-validation
var result = crossvalidation.Compute();
// Finally, access the measured performance.
double trainingErrors = result.Training.Mean;
double validationErrors = result.Validation.Mean;
}
public void CrossvalidationConstructorTest()
{
Accord.Math.Tools.SetupGenerator(0);
// This is a sample code on how to use Cross-Validation
// to assess the performance of Support Vector Machines.
// Consider the example binary data. We will be trying
// to learn a XOR problem and see how well does SVMs
// perform on this data.
double[][] data =
{
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
new double[] { -1, -1 }, new double[] { 1, -1 },
new double[] { -1, 1 }, new double[] { 1, 1 },
};
int[] xor = // result of xor for the sample input data
{
-1, 1,
1, -1,
-1, 1,
1, -1,
-1, 1,
1, -1,
-1, 1,
1, -1,
};
// Create a new Cross-validation algorithm passing the data set size and the number of folds
var crossvalidation = new CrossValidation<KernelSupportVectorMachine>(size: data.Length, folds: 3);
// Define a fitting function using Support Vector Machines. The objective of this
// function is to learn a SVM in the subset of the data indicated by cross-validation.
crossvalidation.Fitting = delegate(int k, int[] indicesTrain, int[] indicesValidation)
{
// The fitting function is passing the indices of the original set which
// should be considered training data and the indices of the original set
// which should be considered validation data.
// Lets now grab the training data:
var trainingInputs = data.Submatrix(indicesTrain);
var trainingOutputs = xor.Submatrix(indicesTrain);
// And now the validation data:
var validationInputs = data.Submatrix(indicesValidation);
var validationOutputs = xor.Submatrix(indicesValidation);
// Create a Kernel Support Vector Machine to operate on the set
var svm = new KernelSupportVectorMachine(new Polynomial(2), 2);
// Create a training algorithm and learn the training data
var smo = new SequentialMinimalOptimization(svm, trainingInputs, trainingOutputs);
double trainingError = smo.Run();
// Now we can compute the validation error on the validation data:
double validationError = smo.ComputeError(validationInputs, validationOutputs);
// Return a new information structure containing the model and the errors achieved.
return new CrossValidationValues<KernelSupportVectorMachine>(svm, trainingError, validationError);
};
// Compute the cross-validation
var result = crossvalidation.Compute();
// Finally, access the measured performance.
double trainingErrors = result.Training.Mean;
double validationErrors = result.Validation.Mean;
Assert.AreEqual(3, crossvalidation.K);
Assert.AreEqual(0, result.Training.Mean);
Assert.AreEqual(0, result.Validation.Mean);
Assert.AreEqual(3, crossvalidation.Folds.Length);
Assert.AreEqual(3, result.Models.Length);
}
private void button1_Click(object sender, EventArgs e)
{
// Creates a matrix from the source data table
double[,] sourceMatrix = (dgvLearningSource.DataSource as DataTable).ToMatrix(out sourceColumns);
// Get only the input vector values
var inputs = sourceMatrix.Submatrix(0, sourceMatrix.GetLength(0) - 1, 0, 1).ToArray();
// Get only the label outputs
var outputs = new int[sourceMatrix.GetLength(0)];
for (int i = 0; i < outputs.Length; i++)
outputs[i] = (int)sourceMatrix[i, 2];
var cv = new CrossValidation<KernelSupportVectorMachine>(inputs.Length, 10);
cv.Fitting = (int k, int[] training, int[] testing) =>
{
var trainingInputs = inputs.Submatrix(training);
var trainingOutputs = outputs.Submatrix(training);
var testingInputs = inputs.Submatrix(testing);
var testingOutputs = outputs.Submatrix(testing);
// Create the specified Kernel
IKernel kernel = getKernel();
// Creates the Support Vector Machine using the selected kernel
var svm = new KernelSupportVectorMachine(kernel, 2);
// Creates a new instance of the SMO Learning Algortihm
var smo = new SequentialMinimalOptimization(svm, trainingInputs, trainingOutputs);
// Set learning parameters
smo.Complexity = (double)numC.Value;
smo.Tolerance = (double)numT.Value;
// Run
double trainingError = smo.Run();
double validationError = smo.ComputeError(testingInputs, testingOutputs);
return new CrossValidationValues<KernelSupportVectorMachine>(svm, trainingError, validationError);
};
var result = cv.Compute();
}